UFO09423.5prime Sequence
1068 bp (801 high quality bases) assembled on 2011-08-17
> UFO09423.5prime
CAATCCACATGTATAGGTATTTGTTGAACATTTCTTACATCGGCACGACT
TTTCGTGGTATTCAAAAGACGGTGAACAAGCTGGAGCAGTCCCGCCTGGA
CACAAAGTCCATACAAGGCTGTTTGGAGCTGGCGTTGCAGGTTTTTCACC
CAACAAACGAAATACACACCGTGCTGTCCAGTCGAACAGACGCCGGTGTA
CACGCCCTGCACTCCACGGTGCAGGTGGACTTGGAGAGGCCTAATGGGCA
GCCCTATGATACAACTATATTAACTGGTGTGCTCAACCGAACCCTTAACA
AACAGCGTCTTCCCATCCGAGTGCTCAGCAGTAAGTTGGTGGCCAACTCC
TTCCACTGCCGCTACGACGCCATTGGACGAACCTATCTCTATCGCTTTGC
CGTGGCAAAGGTACCAACCCTGGGAGATTGCAGTCTCCGGAATAGGTCGT
TCGAGACCTTTATACCAGTTGAAGAAATCGATCGTTGTTACTTTCTGCAA
TCTTCTAGCTTCGATATCAAAAGAGTCCAGGCTGCAGCTCGAATGTTTAT
CGGCGTCCACGACTTTCGAACTTTCATGAGTGTTAGCCGACAGAAAGTTT
GTCGGGATCACCCAATGTTTACAGTGCGCAAAATCGACGAGATTAATATT
CGTCCTGGTGAAACACGTGCATTGTCTTCGAACGCTATTCAGGCCGCTGA
AACATATAATTATTGGGACATCGAGATCAGGGCTAATCATTTCTTTACAA
ACAAGTAAGGCGCATTGTCGGCGCGCTTATGCTTTTGGGTAACGGACGTA
TCGACCAGAGGTGCCTATATCAGATGCTCACCGTTCCCTCGAAGATTCTT
GGGATCACCGTGTGCTCCTGGCTCCAGCCTGTGGGCTTTACCTTTGCAGA
GTGCACTAACCGATAAACGGACATTGCATGCTTTCTAGACCATTCGGTTT
GCGCGCGGGCCAGGTTAAGTGGTCATAATCTTAGTCATATCTTATCATAG
TCACACTAGCCTAGGAGATCTGTTCATGACTAGCGCTGGAATCCCACCAT
AAGAACGCCCGGCCGCTC
UFO09423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkp-RB | 1732 | CG34099-RB | 59..978 | 7..925 | 4425 | 99 | Plus |
| CG34140-RA | 1730 | CG34140-RA | 57..976 | 7..925 | 4425 | 99 | Plus |
| Mkp-RA | 1727 | CG34099-RA | 59..973 | 7..925 | 4340 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 183276..183702 | 925..500 | 1900 | 97.9 | Minus |
| 3L | 28110227 | 3L | 183758..184073 | 499..184 | 1565 | 99.7 | Minus |
| 3L | 28110227 | 3L | 184132..184261 | 184..55 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 184318..184366 | 55..7 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:06:46 has no hits.
UFO09423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:09 Download gff for
UFO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34140-RA | 52..980 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:51 Download gff for
UFO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34140-RA | 52..980 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:11 Download gff for
UFO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34140-RA | 52..980 | 1..929 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:11 Download gff for
UFO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 183276..183702 | 500..925 | 98 | <- | Minus |
| 3L | 183758..184072 | 185..499 | 99 | <- | Minus |
| 3L | 184132..184260 | 56..184 | 100 | <- | Minus |
| 3L | 184318..184371 | 1..55 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:51 Download gff for
UFO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 184132..184260 | 56..184 | 100 | <- | Minus |
| arm_3L | 184318..184371 | 1..55 | 94 | | Minus |
| arm_3L | 183276..183702 | 500..925 | 98 | <- | Minus |
| arm_3L | 183758..184072 | 185..499 | 99 | <- | Minus |
