UFO09424.5prime Sequence
590 bp (589 high quality bases) assembled on 2011-08-17
> UFO09424.5prime
CAGTCGACATTCCCTACAGCAACTGGCTCAAGCTGCTCCACCAGTAACGG
CAGTGGCAGCAGCAGCAACAGCAACCCCCTCAGCGCTGCGGTGCAGCAAC
ATCCGGTGGCATTCATCGAGTTCAAGGACCCACCGACCGCGTCTCAGGCC
ATGCAGCAGCTGCAGGGTAAATATCTGCTCAGCTCCGATCGCGGTTCCAT
CCGCATCGAGTTTGCGCGCAGCAAAATGATCAACGAGGTGACCATAATGA
ACACCAAGGCACCGCCACCACCACCACCCACTGCTGTTGCTGCTACTGTT
GCACCACCGCCACCGCCAGCACCCATGTACATCCTGAACGGCGGTGGGGG
GGTCGAGCATTTGCTGGTCCCAGCACCACCGCCGTCGGCACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACTCCAGATGCAGCAACTGCAACAGCAGATG
CACCTGCAGCAGCAACATCAACAGCAGCAGCAACTCCAATTGACCGTGGC
AGCACCCTGCACTGCAGCAAGCACCACCACCCACAGCAGCACCACTAGCG
TTGTTGTTAACTCACTACAGCACCACCAACTTCATCATCC
UFO09424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpo-RY | 6131 | CG43738-RY | 2838..3412 | 16..590 | 2830 | 99.5 | Plus |
| cpo-RX | 6116 | CG43738-RX | 2876..3450 | 16..590 | 2830 | 99.5 | Plus |
| cpo-RU | 5086 | CG43738-RU | 2893..3467 | 16..590 | 2830 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18011105..18011679 | 16..590 | 2830 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-27 00:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2949 | 17..589 | 278 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2971 | 386..584 | 256 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2854 | 430..544 | 178 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7210 | 14..494 | 175 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2860 | 42..584 | 149 | 53.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1163 | 17..84 | 148 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1164 | 17..107 | 141 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2853 | 17..103 | 139 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6802 | 39..105 | 134 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1037..1141 | 2..105 | 134 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6934 | 17..114 | 133 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..3005 | 18..453 | 129 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7212 | 46..552 | 128 | 53.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1142 | 14..75 | 126 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1588 | 14..79 | 119 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6878 | 14..75 | 118 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6857 | 14..84 | 117 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1584 | 15..84 | 113 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1589 | 37..111 | 111 | 64.5 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 662..727 | 97..31 | 107 | 64.2 | Minus |
UFO09424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:10 Download gff for
UFO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42457-RA | 2757..3338 | 8..590 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:56 Download gff for
UFO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpo-RU | 2886..3467 | 8..590 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:16 Download gff for
UFO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpo-RU | 2886..3467 | 8..590 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:16 Download gff for
UFO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18011098..18011679 | 8..590 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:56 Download gff for
UFO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13836820..13837401 | 8..590 | 98 | | Plus |
