UFO09426.5prime Sequence
800 bp (800 high quality bases) assembled on 2011-08-17
> UFO09426.5prime
CAGTCGACATGTGTTTGAAAGCACGCCATCCCAAAACGAAACGCGATCTG
ATGAACATGAAAACTTTTTGTTTATGGATAGTTCCAGTGCTGATCCTGCT
GCAGCTGGGAATCGAGCAAGTGGAGTCCAAAAAATATCAGCGCTGCGAAC
TCACAAGAGTTTTGGTGGAGAACTACAACTTCGACAAGACCTTCATTTCC
AACTGGATCTGTTTGGTGGAGCACGAAAGTTACTTGGACACCACCAAAGT
AACGAAAAAGGGAAACGAAAGCAAGAACTATGGCCTCTTTCAGATCAACA
GCAAGGATTATTGCAGCGAAGGACGAAAAGGAGGGCAGTGCAATATGAAA
TGTGAAGACTTCTCCAATGACGACATCAGTGACGACATCGCCTGCGCCAG
AATGATCCAGGAACGCGAGGGCTTCAAATACTGGAAGGGCTGGGATCGCT
TCTGCCGCAATCCACAGAATCTGCCCAATCTCCGCGTGGCCTGCAACCTG
CGTAGCCTGTCTCCAGTGCGATCACCTCGTGGATTCTTAACGGGCGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCCGAG
CGTTCTGAACAAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
ACCAGGAGTCCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAA
UFO09426.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16799-RB | 1288 | CG16799-RB | 91..627 | 9..545 | 2685 | 100 | Plus |
| CG16799-RA | 720 | CG16799-RA | 91..627 | 9..545 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20653218..20653407 | 545..356 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 20653744..20653904 | 205..45 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 20653540..20653692 | 357..205 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 20654970..20655006 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:08:28 has no hits.
UFO09426.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:16 Download gff for
UFO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16799-RA | 86..631 | 9..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:36 Download gff for
UFO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16799-RA | 91..636 | 9..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:50 Download gff for
UFO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16799-RA | 91..636 | 9..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:50 Download gff for
UFO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20654970..20655006 | 9..45 | 100 | | Minus |
| 2R | 20653209..20653405 | 358..552 | 98 | <- | Minus |
| 2R | 20653540..20653692 | 205..357 | 100 | <- | Minus |
| 2R | 20653745..20653903 | 46..204 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:36 Download gff for
UFO09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16541045..16541197 | 205..357 | 100 | <- | Minus |
| arm_2R | 16541250..16541408 | 46..204 | 100 | <- | Minus |
| arm_2R | 16542475..16542511 | 9..45 | 100 | | Minus |
| arm_2R | 16540714..16540910 | 358..552 | 98 | <- | Minus |
