UFO09431.5prime Sequence
1118 bp (997 high quality bases) assembled on 2011-08-17
> UFO09431.5prime
CAGTCGACATGTTGGCCGCTGGCAGCAGTGAGATCACTGACTTTGGGCCA
CACTCGCGCCAACTAACGGCTGGCAACACGCCCAAGCGACCCAACAAGGC
CAGCAGCCACCGTCCTGGTTCTGGTTCTGGTCCTGGCCCAATGACAACTG
GTGGCACCAGCTCAGCGAGCGGTAACGGAAACAGCGGTGGGGCTCTGAAC
GCCATTCCCACGACGAAGGTCGGGAGCGGAGGAGGCGGCGGAGGCGCCAT
GTCCGCCACAACGGTGACTGCGACGACGGGGAAAGCTACTGTAAGCCATG
GCCATAGTCATGGCCACGCTCTGGGGCGCAGCGAGACGAGGAGCGGTCGG
AGCGCAGCAGCTGGACGCTCCAATGTGGACGGATTCGTTGGCGGAATCGA
GACGTACTTGGGCCTCATCGGGTGGCGAAAAAAGTGCCTGTATACCCTGC
TGCTACTGCTGATGCTGCTCATCATCACGAACCTGGTGCTCACCCTCTGG
ATACTCAAGGTGATGGAGTTCTCAACGGAGGGCATGGGGCAGCTTAAAAT
CGTACCCGGTGGCATACAGCTGTCCGGACAAGCGATAATTATGGACATGC
TGCGCGCCTCCACAATCCGTTCGCGGCACGGTCAACCCATTTCCATAGAG
TCATCACGTAACTTTTCAATCAATACACGTGATCCGAATGGCATGATTGA
GAATCATTTATTCCTGGGACACGATAAGTTCGAGTGCCTGTCGGCGGGAT
TTCGCATAAACGACACCAACGGACGCAGCCTGTTCTCCGTGAACCGAGAT
GAAGTCACCATCGGAGCACATGCCCTGCGGATCGACGGCGAAAGTTGGCG
CCGTCTTCCGGGAATCCGTGCAGACGCCCATGTGCGGGCCGAGCCCGGCC
GGGAGCTGAGACTCGAATCGCCCACACGCCATTGGAGAATGACGGCGGCC
AAGACATCAATTTGCATCGGCGGGCAGGAGGCATAGAAGTCGTGCCCTTG
TAGACGTCAGTTCCGAGCCCTCGATGGGAGCCTGCGCCTGAGTCCTCAAG
ATTCTTATGCCCAACCTGCCGACGCAGCCGCCATTTCTGGTCTACTAGCA
GATTCATGCACGCGTCTT
UFO09431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 2972 | CG14808-RE | 422..1511 | 9..1090 | 5030 | 98.1 | Plus |
| Scgdelta-RD | 2336 | CG14808-RD | 609..1698 | 9..1090 | 5030 | 98.1 | Plus |
| Scgdelta-RC | 2966 | CG14808-RC | 416..1505 | 9..1090 | 5030 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1749894..1750413 | 528..9 | 2600 | 100 | Minus |
| X | 23542271 | X | 1748032..1748302 | 910..640 | 1215 | 98.2 | Minus |
| X | 23542271 | X | 1749697..1749818 | 648..527 | 610 | 100 | Minus |
| X | 23542271 | X | 1746687..1746812 | 1031..909 | 330 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:08:36 has no hits.
UFO09431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:16 Download gff for
UFO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RD | 602..1694 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:40 Download gff for
UFO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 415..1507 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:53 Download gff for
UFO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RC | 409..1501 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:53 Download gff for
UFO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1746687..1746810 | 911..1031 | 92 | <- | Minus |
| X | 1748032..1748293 | 649..910 | 98 | <- | Minus |
| X | 1749697..1749817 | 528..648 | 100 | <- | Minus |
| X | 1749895..1750417 | 1..527 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:40 Download gff for
UFO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1642065..1642326 | 649..910 | 98 | <- | Minus |
| arm_X | 1640720..1640843 | 911..1031 | 92 | <- | Minus |
| arm_X | 1643730..1643850 | 528..648 | 100 | <- | Minus |
| arm_X | 1643928..1644450 | 1..527 | 99 | | Minus |
