UFO09434.5prime Sequence
1114 bp (965 high quality bases) assembled on 2011-08-17
> UFO09434.5prime
CAGTCGACATGAAATTAAGACTTTTGCGGTGTTTGCGCCAACAGCCGGCG
AAACCAGCGGCGGTTATGACCCACAAGGAGGATCAGTACCCGGTATCACT
TGACCACCACGTGCTCAAGGACATGGCCAAGGGCGTGAGGGACACCACCG
TTAAGATCCTGCTACTAGGCACCGCCGAGTCGGGCAAGACGACCATCATC
AAGCAAATGCGGATACTGCACATCAACGGATTTACAGACGATGAACGGCG
AGAGAAGATACCCGAGATATATCAGAACATCCACGAGTCCATCCTGCAAT
TGGTGGGTCAGATGGGAGTGCTGGGCATTGATTTCGGCAGCTGTACCAGC
GAAAGATCGGCGGACTATATCCTCTCTCTGCCCGGATCGGCACCCGAATA
TATGAACGAGGAGTACTGCGACCACGTCACTACTTTGTGGAACGATGTGG
GTATTCGCGCCTGCTATGATCGCTCAAATGAGTTTCCCCTGCTGGATAGT
GCGAAATACTTCCTGGACAACTTTGTGCGGATCAGCGATGCTGAATACAT
ACCCAGCACCGAGGACATTCTGCACAGCCGTAAGATCACCACCGGCATCT
CGCAAATCACCTTCCGCGTACCCATTCCCAAGAGCATGGGTGGTGGCGAA
CAGCAGTTCCAAATGTACGATGTGGGTGGCCAAAGGGATCAGCGGAATAA
GTGGATTCATGTATTCGAAGGCATACAGGCCGTATTGTTCCTGATCTCGT
GCAGCGAGTTCGATCAGAATCTGCGCGAGGATCCCAGCCAGAATCGTTTG
CAAGAGGCTCTGAAGTTGTTCAGAGCCTTGTGGCAGAATCGTTTCCTCGC
CTCCGCCGGATTGATCGTGTTCCTCACAAGTACGACATCATGGAAGCGAA
AGATTCGGCCGGCAAGCACATTGTGGACTACTTTCCCGAATACGAGGACT
TCTGCAGAGCCGCAGCAGACATGCTTTGGCGGAGAGTGACTGACGAGATG
TCATCAAACAGAAGCTGGTGATATCACACAGGAGCGTCAGCGAACTCACG
GAATCAGTGATCTGGTACTCGGAAGGGATGCTACTACCTTCACGGTCCCC
CAGATACGAATGCA
UFO09434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galphaf-RA | 1825 | CG12232-RA | 333..1455 | 8..1108 | 4905 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16663100..16663548 | 956..509 | 2055 | 98.7 | Minus |
| 3L | 28110227 | 3L | 16665080..16665303 | 241..18 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 16664740..16664909 | 411..242 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 16663642..16663741 | 508..409 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:07:51 has no hits.
UFO09434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:13 Download gff for
UFO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galpha73B-RA | 303..1401 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:18 Download gff for
UFO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaf-RA | 323..1421 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:36 Download gff for
UFO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaf-RA | 323..1421 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:36 Download gff for
UFO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16664741..16664909 | 242..410 | 100 | <- | Minus |
| 3L | 16665080..16665308 | 13..241 | 99 | | Minus |
| 3L | 16662961..16663548 | 509..1078 | 95 | <- | Minus |
| 3L | 16663642..16663739 | 411..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:18 Download gff for
UFO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16656061..16656648 | 509..1078 | 95 | <- | Minus |
| arm_3L | 16656742..16656839 | 411..508 | 100 | <- | Minus |
| arm_3L | 16657841..16658009 | 242..410 | 100 | <- | Minus |
| arm_3L | 16658180..16658408 | 13..241 | 99 | | Minus |
