UFO09436.5prime Sequence
1127 bp (1006 high quality bases) assembled on 2011-08-17
> UFO09436.5prime
CAGTCGACATGAGCAACTACCGATATCAGGGTGCTGGGCTCGGGGGCGTC
GGCATGGCCGGGGGGCGTGGCTACAGCGGCATCGAGGTGCACGAGGTGAT
GCATCCGCATCACTTCACCTACGTGAGCCAGTGCGTCAAGTACATGATCT
TCCTGCTGAACTTCGTGTTCTGGCTCTTTGGCGGCCTGCTCCTGGGCATT
GGCGTCTATGCGTTCAGGGACAAGTGGGAGGACGCGAACGGATCGGTGCG
GCTGGAGAACTTCTACGACGTATTCCTCAATATCTCGCTGGTGATGATCC
TGGCCGGCACGGTCATCTTTCTGGTCAGCTTCTCCGGCTGCGTGGGCGCA
CTGCGCGAGAACACATTCCTACTGAAGTTCTACTCCATGTGCCTGCTGCT
TTTCTTCCTGCTGGAGATGGCCATCGCCATCGTCTGCTTCGTGTGCCCGC
AGTACATGAACACCTTTTTGGAGAAGCAGTTCACGCACAAGATCATCCAC
TCGTACCGCGACGATCCCGACCTGCAGAACTTCATTGACTTTGCCCAGCA
GGAGTTCAAGTGCTGTGGCCTCAGTAATTCGGGCTACCAGGACTGGAGCA
AAAACGAGTACTTCAACTGCAGCTCGCCGTCGGTGGAGAAGTGCGGAGTG
CCATACAGTTGTTGCATCAATGCCACCGACATATCCTCCGGCCTGGTGAA
CATCATGTGCGGCTACGGCGTTCAAAACGCTCCCGTTCCGGAGGCCACGA
AACTGATCTGGACCAGCGGCTGCATAGAATCGTTCGAGTTTGGGCCGAGC
ACAATCTGTACGTGATTGCCGGCAATGCTCTGGGCATTGCGCTCATCCAG
CTGCTGGTCATCTACTTGGCCAGACGCTGGAGGGCCAATCGAGCTGCAGA
AGTCGCGTTGGCTGGCGGCAAGCTTTCTAGACCATTCGTTTGGCCGCGCG
GGCCCAGTTAGTGTCATATCATAATCATAATCATATCATATCCACAACTA
GCCTAGGAGATCCTTGGTCATGACTATGCTTGCATTCTCCACCATAAAAA
ACCGCCCGGCCGGCACCCGAGCGTTCTGGACCATCCGAATGGGTTTTGAG
TCCTACTGAATCTAATCAACAGGATCC
UFO09436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp3A-RB | 1798 | CG10742-RB | 206..1117 | 9..917 | 4485 | 99.7 | Plus |
| Tsp3A-RA | 1280 | CG10742-RA | 206..1117 | 9..917 | 4485 | 99.7 | Plus |
| Tsp86D-RB | 1401 | CG4591-RB | 384..1195 | 103..911 | 1570 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2619116..2619533 | 426..9 | 2090 | 100 | Minus |
| X | 23542271 | X | 2618439..2618761 | 917..598 | 1465 | 99.1 | Minus |
| 3R | 32079331 | 3R | 10869091..10869586 | 103..598 | 1010 | 80.2 | Plus |
| X | 23542271 | X | 2618868..2619040 | 598..426 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 10869643..10869959 | 598..911 | 490 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:08:09 has no hits.
UFO09436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:14 Download gff for
UFO09436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp3A-RA | 198..1117 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:26 Download gff for
UFO09436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp3A-RA | 198..1117 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:42 Download gff for
UFO09436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp3A-RA | 198..1117 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:42 Download gff for
UFO09436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2618439..2618761 | 598..917 | 99 | <- | Minus |
| X | 2618869..2619039 | 427..597 | 100 | <- | Minus |
| X | 2619116..2619541 | 1..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:26 Download gff for
UFO09436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2512472..2512794 | 598..917 | 99 | <- | Minus |
| arm_X | 2512902..2513072 | 427..597 | 100 | <- | Minus |
| arm_X | 2513149..2513574 | 1..426 | 99 | | Minus |
