UFO09437.5prime Sequence
1122 bp (941 high quality bases) assembled on 2011-08-17
> UFO09437.5prime
CAGTCGACATGCTCACCAGACAACCCGACTACACCATCTCCGAGCTGGGC
CATCCCATCCATCAGTGGTCGGATTCCACCGCGTGCGAGTCCCTCAAGAA
GCTGGACTACACAAAGATGCCCAGTTCTCCGCCATCACCACATCGCCTGC
TGCCACTGAGGGAAACGTTGGACGATTGTTTCAAGCGCTTGACGATGAGG
AGCAGAGAAGATTTCGAAGAGGATCCCGTATACCAGCAGAAATTGAGAAA
GAATCAGTGCAATGAACAGCAGCGAAGGCGCAATCAAAAATGTCGAGATA
AAGCCCAGTCCGGAGCAACAACGACGACGACGACGACGACAACGATAGCG
GCGAGCTGCGATTTAAACAATTTCGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTAAATCA
AAACTGGTGAAACTCACCCTGGGATTGGCTGAGACGAAAAACCTTATTCT
CAATAAACCCTTTAGGGAAATAGGCCAAGGTTTCCACCGTAACCACGCCA
CATCTTGCGAATATATGTGTAGAAAACTGCCCGGAAATCGTCGTGTTATT
CACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCAATGGAAAACCGTGTT
AACAGGTGAACACCTATCCCATAATCACCCAGCTTCACCGTCTTCCATGC
CAATACGAAATTCCGGATGACCATTCCTCAGGCGGCAGATGATAAGGCCG
ATAACTGGCTATTCTACGCTTA
UFO09437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31710-RC | 795 | CG31710-RC | 309..674 | 9..374 | 1815 | 99.7 | Plus |
| CG31710-RA | 728 | CG31710-RA | 242..607 | 9..374 | 1815 | 99.7 | Plus |
| CG31710-RD | 1253 | CG31710-RD | 242..610 | 9..374 | 1775 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9703268..9703539 | 280..9 | 1345 | 99.6 | Minus |
| 2L | 23513712 | 2L | 9703085..9703179 | 374..280 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:16 has no hits.
UFO09437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:19 Download gff for
UFO09437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31710-RA | 232..604 | 9..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:57 Download gff for
UFO09437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31710-RA | 242..614 | 9..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:08 Download gff for
UFO09437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31710-RA | 242..614 | 9..382 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:08 Download gff for
UFO09437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9703085..9703178 | 281..374 | 100 | <- | Minus |
| 2L | 9703268..9703539 | 9..280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:57 Download gff for
UFO09437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9703085..9703178 | 281..374 | 100 | <- | Minus |
| arm_2L | 9703268..9703539 | 9..280 | 99 | | Minus |
