Clone UFO09439 Report

Search the DGRC for UFO09439

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:94
Well:39
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG4884-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09439.5prime Sequence

1124 bp (942 high quality bases) assembled on 2011-08-17

> UFO09439.5prime
CAGTCGACATGCTCCGGACTTTTCGTCAAATAGCCCGACTAGGAAGATCC
CTAAGGACGCCATTTCCATCTAAAAGTCTGCCTAAACTCTCAACCACCTT
AGAGCTGCAGGCTCCTGTACACACCAGTGCTTCAGCGTGGAAGTACGACA
AGAAATCCTCACGAGCATCGGATGACTTGGACAGCGACGACGAGGATGAT
GAGGATTTCAAGGACGAAAGGGACTCCAAGGTGGTCAAGACCAAGGTGAA
CTCACTGCGCGCCGATCTCCTACTGAAAGCTGGCCTGGGCATGGCGAGAA
ACAAAGTGGAACTGAATTTCTACGAGAGCAAGATACGCGTCAATGGAAAG
AAGCTGCCCAAAAAGAGTGCCCAGCTGGAAGTCGGCGATGAAATCGACGT
AATCCGAGGCTTTAGTCAATCGAATCCTTCCCATCTGGTCGTGGCCCGCG
TCTCAATCCTCTCCGTCAGCGAGCGCGAGGAAGGACTCAGCGTCCACCTG
AGGCGCTACAAAATCCCTGCTGGTCGAGAATTACCGGGGACCCAACGCCT
TCAAATCCTCAGAGCACGTTGCTCATGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAT
TCATTTAAGCATCAGCCGACATGGAAGCCATCCACAACGGCATGATGACC
CTGAATCCGCCAGCGGCATCAGCCACCTTGTCCGCCTTGCCGTATTATAT
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAATTTGCCACG
TTTAATTCAACCTGGTGAACTACCCCAGGGAATTGCTGAAACGAAAACTT
ATTCCTCATAATCCCTTTAAGGAAATATGCCCAGTTCCACGTAACACGCC
CAATCTTGCATATTGTGTAGAACT

UFO09439.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG42487-RA 1718 CG42487-RA 1089..1655 9..576 2815 99.8 Plus
CG4884-RB 1718 CG4884-RB 1089..1655 9..576 2815 99.8 Plus
CG4884-RA 649 CG4884-RA 48..614 9..576 2815 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27957807..27958099 301..9 1465 100 Minus
3R 32079331 3R 27957419..27957622 576..372 975 99.5 Minus
3R 32079331 3R 27957672..27957744 374..302 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:09:35 has no hits.

UFO09439.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:20 Download gff for UFO09439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 479..1056 1..580 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:05 Download gff for UFO09439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 479..1056 1..580 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:16 Download gff for UFO09439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 40..617 1..580 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:16 Download gff for UFO09439.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27957415..27957619 375..580 98 <- Minus
3R 27957672..27957744 302..374 100 <- Minus
3R 27957807..27958105 1..301 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:05 Download gff for UFO09439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23783137..23783341 375..580 98 <- Minus
arm_3R 23783394..23783466 302..374 100 <- Minus
arm_3R 23783529..23783827 1..301 98   Minus