UFO09439.5prime Sequence
1124 bp (942 high quality bases) assembled on 2011-08-17
> UFO09439.5prime
CAGTCGACATGCTCCGGACTTTTCGTCAAATAGCCCGACTAGGAAGATCC
CTAAGGACGCCATTTCCATCTAAAAGTCTGCCTAAACTCTCAACCACCTT
AGAGCTGCAGGCTCCTGTACACACCAGTGCTTCAGCGTGGAAGTACGACA
AGAAATCCTCACGAGCATCGGATGACTTGGACAGCGACGACGAGGATGAT
GAGGATTTCAAGGACGAAAGGGACTCCAAGGTGGTCAAGACCAAGGTGAA
CTCACTGCGCGCCGATCTCCTACTGAAAGCTGGCCTGGGCATGGCGAGAA
ACAAAGTGGAACTGAATTTCTACGAGAGCAAGATACGCGTCAATGGAAAG
AAGCTGCCCAAAAAGAGTGCCCAGCTGGAAGTCGGCGATGAAATCGACGT
AATCCGAGGCTTTAGTCAATCGAATCCTTCCCATCTGGTCGTGGCCCGCG
TCTCAATCCTCTCCGTCAGCGAGCGCGAGGAAGGACTCAGCGTCCACCTG
AGGCGCTACAAAATCCCTGCTGGTCGAGAATTACCGGGGACCCAACGCCT
TCAAATCCTCAGAGCACGTTGCTCATGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAT
TCATTTAAGCATCAGCCGACATGGAAGCCATCCACAACGGCATGATGACC
CTGAATCCGCCAGCGGCATCAGCCACCTTGTCCGCCTTGCCGTATTATAT
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAATTTGCCACG
TTTAATTCAACCTGGTGAACTACCCCAGGGAATTGCTGAAACGAAAACTT
ATTCCTCATAATCCCTTTAAGGAAATATGCCCAGTTCCACGTAACACGCC
CAATCTTGCATATTGTGTAGAACT
UFO09439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42487-RA | 1718 | CG42487-RA | 1089..1655 | 9..576 | 2815 | 99.8 | Plus |
CG4884-RB | 1718 | CG4884-RB | 1089..1655 | 9..576 | 2815 | 99.8 | Plus |
CG4884-RA | 649 | CG4884-RA | 48..614 | 9..576 | 2815 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27957807..27958099 | 301..9 | 1465 | 100 | Minus |
3R | 32079331 | 3R | 27957419..27957622 | 576..372 | 975 | 99.5 | Minus |
3R | 32079331 | 3R | 27957672..27957744 | 374..302 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:35 has no hits.
UFO09439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:20 Download gff for
UFO09439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4884-RA | 479..1056 | 1..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:05 Download gff for
UFO09439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4884-RA | 479..1056 | 1..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:16 Download gff for
UFO09439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4884-RA | 40..617 | 1..580 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:16 Download gff for
UFO09439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27957415..27957619 | 375..580 | 98 | <- | Minus |
3R | 27957672..27957744 | 302..374 | 100 | <- | Minus |
3R | 27957807..27958105 | 1..301 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:05 Download gff for
UFO09439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23783137..23783341 | 375..580 | 98 | <- | Minus |
arm_3R | 23783394..23783466 | 302..374 | 100 | <- | Minus |
arm_3R | 23783529..23783827 | 1..301 | 98 | | Minus |