UFO09442.5prime Sequence
1119 bp (1019 high quality bases) assembled on 2011-08-17
> UFO09442.5prime
CAGTCGACATGCATCGCGAAAACGCCTACAGCAAGGAGGCCGAGCTGAAG
AATCTGGCCAAACGCGAGTTGGCCAACGGGTTGGACAAGGATCCAATTTA
CAAATTGCGCCTGCAGTGCTTCAGTCGCGGTGCCACCGGCATCTTGGGCC
TGTCCAGATCATTCCGGGTGATGGACGACGATGGCAGCAAATCTCTCAGT
CCCGAGGAGTTCAAAAAAGGAGTCACGGATATCGGCCTGGACCTGACTGA
TTCCGAAATCGATGAAATGTTCTCCAGATTCGACACAGATGGAAGTGGCA
ATATTAATATGACAGAATTCCTAGTAAAGCTGCGTCCTCCTATGAATAAT
TCGCGTATCAGTATCATCGAAAAGGCCTTCGATAAGATGGATGCCAATGG
CGATGGCCAAATTACTGTCACCGATTTGAAGAATGTATATTCGGTGCGCG
ATCATCCGAAATACTTAAGTGGCGAGATGACGGAAAACCAGATATTCACG
CAGTTCCTGAAAAACTTCGAGGTGGGTGCTCCAAATCCGGATGGCATCGT
AACCAGGGAGGAATTTATCAACTACTATGCCACGATCAGCGCCTCGATCG
ATAACGACGCTTATTTTGATCTTATGATGAGACAAGCCTACAAACTCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCCGACATGCAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGCATCAGCACCTGTCGCT
GCGTATAATATTTGCCCATGTTGAAACGGGGGGCGAGAAGTGTCATATTG
CACGTTAATCCAACTGGGTGAAACCCACCCAAGATGCCTGAAACGAAAAC
ATATTCATACTAGGAATAG
UFO09442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31345-RA | 984 | CG31345-RA | 143..781 | 9..647 | 3195 | 100 | Plus |
| CG10126-RB | 835 | CG10126-RB | 146..276 | 83..213 | 190 | 76.3 | Plus |
| CG10126-RA | 907 | CG10126-RA | 218..348 | 83..213 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12811348..12811659 | 647..336 | 1560 | 100 | Minus |
| 3R | 32079331 | 3R | 12813773..12813921 | 157..9 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 12811950..12812074 | 277..153 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 12811720..12811781 | 335..274 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:56 has no hits.
UFO09442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:21 Download gff for
UFO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 143..787 | 9..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:14 Download gff for
UFO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 143..787 | 9..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:25 Download gff for
UFO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 143..787 | 9..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:25 Download gff for
UFO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12811342..12811659 | 336..655 | 98 | <- | Minus |
| 3R | 12811720..12811777 | 278..335 | 100 | <- | Minus |
| 3R | 12811950..12812069 | 158..277 | 100 | <- | Minus |
| 3R | 12813773..12813921 | 9..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:14 Download gff for
UFO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8637064..8637381 | 336..655 | 98 | <- | Minus |
| arm_3R | 8637442..8637499 | 278..335 | 100 | <- | Minus |
| arm_3R | 8637672..8637791 | 158..277 | 100 | <- | Minus |
| arm_3R | 8639495..8639643 | 9..157 | 100 | | Minus |
