UFO09444.5prime Sequence
1113 bp (1006 high quality bases) assembled on 2011-08-17
> UFO09444.5prime
CAGTCGACATGGCCATGATACCAACCACCTACAACGAAAAGGATAATATC
TGGAGTGGAGCCAAGCGTAACTCCATCTACAACTATGACACCTCCGTGGG
CAAGATCATCTTCAACAACATGAAGAACTGGCCCAAGAATGTGTGCCAGA
TATGTGATGTAGATGGAGTGACTGTCACCTTCGAGCAGGGTCTCACCTGG
TCCATCCGGATTGCGCAGTACCTTAAGAAGAGGGGTCTTAACCACAAGGA
TGTCATTGGAATTGCAGCCAAAAACTCAACCTATGTGATGCCCCTTGGAG
TGGCCTGTTTGATGAATGGCACCCCATTCCATTCGGTTAATCCTGTGCTA
GATGATGCAACCTTGACGCATGTGTTTTCGATCACAAAGCCCACACTGAT
ATTTTGTGATGGACAAGAGTACGATAAAGTGCATAAGGCTACGGTAGGAT
GGCATCCGGAAATCCTTACCCTCACGGATCATGTGGAAGGAGTCCAGGGC
ATCGAGACCTTGCTGGATCCCACCACTACAGAAAAGATATATCAACCGGA
AGTGTTGAAGGAAGGAGGTGATCAAACCGTAGCCATCCTATGCTCCTCTG
GAACCACTGGTTTGCCCAAGGCCGTCTGCATTTCCAACAGCATTCTGATC
CAAGACAGCATGTTGATCACCAGTCAGTCGGTTATCTATGTAGGAAGCTG
TCTGGACTGGATCACGGGCTTGTGGGCCTTTGTGTTCAGCACCGTATTCG
GTTGCACCCGCATTATCAGTAACAAAGCCTTCACTCCGGAGTACTTTGTG
GGACTGGTGAAGAAATACAAGATCAACTATGCTGTGCTGCCGCCGCGTCA
TCTGTCCGCTCTGATCACTGTCCGGATGCGAAGCCGGATGCACTGGCTCC
CATCACGCACTCAACTACGGCGGAGATCGATATCGTTGGCCACCCTGCAG
CGGTCGCAAGAACTCTTGCAGACAGCCATGTTCATTCGGGATACGGGATG
ACGAGGTGGGCGTCATCACGATCAATCGATCGACGTCTCGACTCTCTCGT
CGCGAGCAGCTGGTGCCCGGCATAGAATTCGTATCCTGGATGAGGATGGC
AAGAGCTTGGCCT
UFO09444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8834-RA | 1832 | CG8834-RA | 51..1160 | 7..1110 | 5005 | 97.4 | Plus |
| CG4830-RA | 1861 | CG4830-RA | 152..390 | 105..343 | 310 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12421232..12421601 | 1026..662 | 1525 | 97.3 | Minus |
| 2R | 25286936 | 2R | 12422080..12422291 | 357..146 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 12421837..12422024 | 544..357 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 12422343..12422485 | 149..7 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 12421658..12421776 | 663..545 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 12209900..12210069 | 343..174 | 190 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:10:05 has no hits.
UFO09444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:22 Download gff for
UFO09444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RB | 47..1163 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:19 Download gff for
UFO09444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RA | 47..1163 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:29 Download gff for
UFO09444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RA | 47..1163 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:29 Download gff for
UFO09444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12422343..12422489 | 1..149 | 97 | | Minus |
| 2R | 12421144..12421601 | 662..1113 | 93 | <- | Minus |
| 2R | 12421660..12421776 | 545..661 | 100 | <- | Minus |
| 2R | 12421837..12422023 | 358..544 | 100 | <- | Minus |
| 2R | 12422080..12422287 | 150..357 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:19 Download gff for
UFO09444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8309848..8309994 | 1..149 | 97 | | Minus |
| arm_2R | 8308649..8309106 | 662..1113 | 93 | <- | Minus |
| arm_2R | 8309165..8309281 | 545..661 | 100 | <- | Minus |
| arm_2R | 8309342..8309528 | 358..544 | 100 | <- | Minus |
| arm_2R | 8309585..8309792 | 150..357 | 100 | <- | Minus |
