UFO09447.5prime Sequence
1123 bp (1004 high quality bases) assembled on 2011-08-17
> UFO09447.5prime
CAGTCGACATGAGGTCGTTTTGTATATTGGCCTTATTAATAACCCTTAAG
TTCGAAATGGGATATGGAAATTCTGTCTGCAATCTTCAGGCCACATTCAT
TGGATGGTGTAAAATGACTATAAGAGGATTTACTTTCGTAGCTTCCAAAA
ACGCATGCCGTAGAATTTCTGGACCATGTGCTGCACAGGATAACTTTTTC
ATGGACAAAGCTTCCTGCGAAACAGCATGCAAAAAAATAATATTACCTGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG
CCGGAAATCGTCCTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG
CTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCT
CACCGTCTTTCATTGCCATACGAAATTCCGATGAGCATTCATCAGCGGGC
AAGAATGTGAATAAGGCCGGATAAAAACTTGTGCTTATTTTTTCTTTACG
TCTTTAAAAAGCCGTAATAATCAGCTGACGGTCTGCTATAGTACATGGAG
CACTGACTGATGCCTCAATGTTCTTACGATGCATTGGTATATTACACGGT
GGTATTCCAGTATTTTCCATAGC
UFO09447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp24C1-RA | 363 | CG42466-RA | 27..266 | 9..248 | 1200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3700820..3700995 | 73..248 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 3700700..3700763 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 814..883 | 124 | 67.6 | Plus |
UFO09447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:18 Download gff for
UFO09447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp24C1-RA | 25..270 | 5..252 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:51 Download gff for
UFO09447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp24C1-RA | 25..270 | 5..252 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:05 Download gff for
UFO09447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp24C1-RA | 25..270 | 5..252 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:05 Download gff for
UFO09447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3700698..3700763 | 5..72 | 97 | -> | Plus |
| 2L | 3700820..3700995 | 73..248 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:51 Download gff for
UFO09447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3700698..3700763 | 5..72 | 97 | -> | Plus |
| arm_2L | 3700820..3700995 | 73..248 | 100 | == | Plus |
