UFO09450.5prime Sequence
1134 bp (1020 high quality bases) assembled on 2011-08-17
> UFO09450.5prime
CAGTCGACATGAAGATCCATCTCATATTTGTTATAGTATCTCTGGTATTG
GCGAAAACCATTGCAGACGAATGCCTTACCTGTGACTGGAAAAGTAATAT
CCATTGTGGAAAGGTTGCTGATGGCTCATGTGTGTTTACTGCTCTGAATC
GATGCCAAGTTGAAAGAATTTCATGCCGTCGAGAGCAAAAAAAGCTGAAA
CCATTCACCGAAATTGTTAAAGGAAAGTGCCCTAAGGACAAAGAAAAGTG
CGCCAAGATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATAT
GTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAA
ACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCC
CATATCACAGCTTCACCGTCTTTCATTGCATACGAAATTCCGGATGAGCA
TTCATCAGCCGGGCAAGATGGTGATAAAGGCCGGATAAACTTGTGCTTAT
TTTTTCTTTACCGTCTTAAAAGGCGTAATATCAGCTTGACGGTCTGTTAT
AGGTACTGAGCAACTGACCTGAATTGCCTCAATGTTCTTAGACGATTGCC
ATTGATTCACGGTGATATTCAGTGATTTTTCCAT
UFO09450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp26Ac-RA | 309 | CG42469-RA | 23..275 | 8..260 | 1265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5884506..5884677 | 201..30 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 5884384..5884442 | 260..202 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 829..896 | 123 | 68.1 | Plus |
UFO09450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:25 Download gff for
UFO09450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp26Ac-RA | 14..278 | 1..264 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:36 Download gff for
UFO09450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp26Ac-RA | 14..278 | 1..264 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:44 Download gff for
UFO09450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp26Ac-RA | 14..278 | 1..264 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:44 Download gff for
UFO09450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5884380..5884442 | 202..265 | 95 | <- | Minus |
| 2L | 5884506..5884676 | 31..201 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:36 Download gff for
UFO09450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5884380..5884442 | 202..265 | 95 | <- | Minus |
| arm_2L | 5884506..5884676 | 31..201 | 100 | <- | Minus |
