UFO09453.5prime Sequence
1102 bp (1003 high quality bases) assembled on 2011-08-17
> UFO09453.5prime
CAGTCGACATGGCGGACGACGAGCAATTCAGCTTGTGCTGGAACAACTTC
AACACGAATTTGTCGGCCGGCTTCCACGAGTCGCTATGCCGCGGCGACCT
GGTGGACGTCTCGCTGGCCGCCGAGGGCCAAATAGTGAAGGCCCACCGAT
TGGTGTTATCCGTCTGCTCGCCCTTCTTCCGCAAGATGTTCACTCAGATG
CCGTCGAACACCCACGCTATCGTATTCCTGAACAACGTCAGCCACTCGGC
GCTGAAGGACCTCATCCAATTCATGTACTGCGGCGAGGTCAACGTGAAGC
AGGACGCCCTGCCCGCGTTTATTAGCACCGCGGAATCGCTGCAAATCAAG
GGGCTAACGGATAACGATCCTGCGCCTCAGCCGCCGCAGGAATCCAGCCC
GCCGCCAGCAGCACCTCATGTACAACAACAGCAAATACCGGCTCAGCGGG
TGCAGCGCCAGCAGCCTCGCGCCTCCGCCCGCTACAAGATCGAGACCGTG
GACGACGGCCTGGGCGACGAGAAACAGAGCACCACCCAGATCGTCATCCA
GACCACGGCCGCACCCCAAGCCACCATTGTACAACAGCAGCAACCGCAGC
AGGCGGCGCAGCAGATCCAATCGCAGCAGCTGCAGACGGGAACCACGACG
ACGGCGACGCTGGTGTCGACAAACAAACGCTCTGCCCAGCGCTCCTCCCT
GACCCCCGCCTCCTCGAGCGCCGGCGTAAAGCGCTCCAAGACAAGCACCT
CCGCAAATGTTATGGACCCTCTCGACTCGACCACTGAAACTGGAGCCACG
ACAACCGCCCAACTTGTGCCGCAACAGATCACCGTGCAAACCTCTGTGGT
CTCTGGGGCAGAAGCAAGCTCCACAGCAATCGCCGCAGCAGTTCGACAGG
AGGAAGCCGAGTACATTGATCTCCCCATGGAAATTGCCCCACGAAATCTG
AACCTGACTACTCTGAGGACCATGGCGACGCCGCCGGCGATGCCGAGGCA
CCTATGTGGAGGACGATACTACGAGACTGCGCTACGACGAAAGCTACCTC
ACTGAAACGAGGATGCTGCAACAGACTGCGCCAATCCACCGTGCGGATGA
CC
UFO09453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mod(mdg4)-RAF | 1839 | CG32491-RF | 159..1242 | 9..1084 | 5070 | 98.5 | Plus |
mod(mdg4)-RAE | 1596 | CG32491-RAE | 157..1240 | 9..1084 | 5070 | 98.5 | Plus |
mod(mdg4)-RAD | 1689 | CG32491-RAD | 157..1240 | 9..1084 | 5070 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21375201..21375912 | 1068..363 | 3035 | 97.6 | Minus |
3R | 32079331 | 3R | 21376819..21377032 | 222..9 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 21376602..21376742 | 362..222 | 705 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6922 | 403..635 | 181 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2883 | 552..658 | 138 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 581..658 | 134 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2397 | 581..652 | 130 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6848 | 522..655 | 130 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6809 | 581..658 | 125 | 63.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1078..1157 | 581..658 | 125 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1602 | 520..648 | 122 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6843 | 528..634 | 119 | 62 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1144 | 515..602 | 115 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6805 | 581..635 | 113 | 67.3 | Plus |
UFO09453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:26 Download gff for
UFO09453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(mdg4)-RI | 149..1240 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:46 Download gff for
UFO09453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(mdg4)-RAD | 149..1240 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:53 Download gff for
UFO09453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(mdg4)-RAD | 149..1240 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:53 Download gff for
UFO09453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21376602..21376741 | 223..362 | 100 | <- | Minus |
3R | 21376819..21377040 | 1..222 | 98 | | Minus |
3R | 21375183..21375912 | 363..1084 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:46 Download gff for
UFO09453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17202324..17202463 | 223..362 | 100 | <- | Minus |
arm_3R | 17202541..17202762 | 1..222 | 98 | | Minus |
arm_3R | 17200905..17201634 | 363..1084 | 97 | <- | Minus |