UFO09454.5prime Sequence
1147 bp (1030 high quality bases) assembled on 2011-08-17
> UFO09454.5prime
CAGTCGACATGTCGGTGCCAATCCGCTTTCGCAGTCGACGAGTTGGAGCT
GCGCAAGAACCACCAAGAGCTGCCCGCAAAGACATGACTACATGCAGTGT
GACCAGCACACCAGCGCGGTTTGCCCGCTGCCTGGCTAACTTCCAGGTGG
ACGAGCTGCTGCTGTTAAAGAAGTCCGTGATGAGTATGGAGGCGCTGGAT
AAGAACGATAGTCTCCAGCCGACTACGGAATGCCCACAGATGGCGCCGGA
TGGATCGCCACTGCCAGAGCGAATGGCCTTGATGGCCGCAGATCGGGGTG
AGCACGACACCACTGGCTCCCATGGTCCCTGGCACTCCCATCCACACGCG
CCGACTTCCTGGACCGAGGAAAAGCCCTCAAAGTTGCAGACCCTATTCCA
GATCAGCATTACGGCCCTGGCCTTTCTCTCCTTCGGCGGCTATCTACTCT
GCCTAATCGTGCAGGCCATCAAGAGCAAGGGCACCACCTACTTCCATCCG
GTGGCCACGGCCACGACCAGCTCATCCACAAGCAATGTGAAACGCATCAA
GATATACCGCCGCAGCAAGCGCAGCTCTGTGCGCCCCGATACCGATCTGC
CAACCCTGCTGCAGCAGGACTACGCCTCCTACATGAAATCTTTGCGAGAT
CGCGGCTGGGGCATGCTTACCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACCTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACCTGAA
TCGCCTGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGG
TGAAAACGGGGGGAAGAGTTGTCCATTTGGCCCGGTTTATCAACTGTGAA
CTCACCAGGATTGCTGAACGAAACATTTCTCATAACCTTAGGGAAAT
UFO09454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14797-RC | 3151 | CG14797-RC | 2051..2713 | 9..671 | 3315 | 100 | Plus |
| CG14797-RB | 1470 | CG14797-RB | 370..1032 | 9..671 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1684077..1684453 | 295..671 | 1885 | 100 | Plus |
| X | 23542271 | X | 1683828..1684025 | 99..296 | 990 | 100 | Plus |
| X | 23542271 | X | 1683670..1683760 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:11:15 has no hits.
UFO09454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:27 Download gff for
UFO09454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14797-RB | 1..591 | 84..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:51 Download gff for
UFO09454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14797-RB | 364..1032 | 1..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:56 Download gff for
UFO09454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14797-RB | 364..1032 | 1..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:56 Download gff for
UFO09454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1683829..1684024 | 100..295 | 100 | -> | Plus |
| X | 1684078..1684453 | 296..671 | 100 | == | Plus |
| X | 1683664..1683760 | 1..99 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:51 Download gff for
UFO09454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1577697..1577793 | 1..99 | 96 | -> | Plus |
| arm_X | 1577862..1578057 | 100..295 | 100 | -> | Plus |
| arm_X | 1578111..1578486 | 296..671 | 100 | == | Plus |
