UFO09458.5prime Sequence
1099 bp (969 high quality bases) assembled on 2011-08-17
> UFO09458.5prime
CAGTCGACATGGATAAACTAACGACAATTAGTGCCACGCTCTTCATGGCG
GCCGATGTCTTTGCGATTGTGAGTCTGGCCCTTCCCGACTGGATCATCAC
GGAGTCCGGAACGGGTGACATCCGATTGGGACTGATGTGGACCTGCATGA
CGCTATATAACCGACCGCAAGTGTGCTATACACCCGAACTGCAGCCGGAG
TGGCTGATTGCACTGATCTGCATCTTTGTGGGCTGCATCTGCGTGACCAC
CACCGTCATTCTGCTGGCGTCGTCATCCTGCAACCGGAATGTGATTCCGT
ACGCGCGCTGGGTGGGATTCACGGCCATGGTGCTCTTCTGCATGGCGGCC
GTCGTCTTCCCGCTGGGATTCCACGTAGAGGAGATCGGCGGACAGGCCTA
CCAGCTGCCCAACACATTCAAGATTGGCATCTCCTACATCATGTTCGTCC
TGGCCCTGTGGATCACCGTCGTGTCTGAGCTCTTTGCCGGCAAGGTCTGC
CTGCCGCACTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGAAGATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAA
CGGGGCGAGAGTTGTCCATTATTGCCACGTTTAAATCAAACTGTGAACCC
CACCCAGGGAATGGCCTGAAACGAAACATATCTCATAAACCCTTTAGAAT
AGCCAGGTTTTCCACCGTACCCGCCCCCATCTGCGATATATGTGTAAACT
GCCGAATCCGTCTGAATCCACCCGAGCGATGAACGTTCCAGTTGCCTCA
UFO09458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14182-RB | 626 | CG14182-RB | 51..554 | 9..512 | 2520 | 100 | Plus |
| CG14182-RD | 1032 | CG14182-RD | 51..554 | 9..512 | 2520 | 100 | Plus |
| CG14182-RA | 932 | CG14182-RA | 51..554 | 9..512 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19979191..19979589 | 512..114 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 19979655..19979762 | 116..9 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:10:13 has no hits.
UFO09458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:23 Download gff for
UFO09458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14182-RA | 47..559 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:24 Download gff for
UFO09458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14182-RA | 47..559 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:32 Download gff for
UFO09458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14182-RA | 47..559 | 1..517 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:32 Download gff for
UFO09458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19979191..19979588 | 115..512 | 100 | <- | Minus |
| 3L | 19979657..19979766 | 1..114 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:24 Download gff for
UFO09458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19972291..19972688 | 115..512 | 100 | <- | Minus |
| arm_3L | 19972757..19972866 | 1..114 | 96 | | Minus |
