UFO09462.5prime Sequence
1094 bp (972 high quality bases) assembled on 2011-08-17
> UFO09462.5prime
CAGTCGACATGGTTGTTACGTGTGAGATCAGCTTCGATAATAATAAACAT
GGTACTTTCTACGCCGGTCAGCTGGTAAAAGGATGCGCGACCCTTAAATG
TGACAGGTCCAAGGAGGTTCAAGCTGTGCTGCTCAAGGTAGTCGGATATT
CTATAACCAAGTGGAGCGAAAAGAGTCTGGGCTCGACAAAACTCTACGTG
GGCCGGGAGGATTATCTATCATCAAATACTTATCTCGTGGGTTCCGAGCA
AAACAACACTCACAACAACACTCACAGACTCACTATTGAGGCTGGGGTTC
ACAGCTACAACTTCACCTGCCAGCTGCCCTATCAATGCCCCTCGTCCTTT
GAGGGTCGCCATGGATGCATCCGCTATATAGTGAAAGTCCTGCTGATCAG
ACCGTGGAAGTTCGATCAGGCCTACACAAAGGGCTTCACGGTTCTCAAGA
TGCTGGATCTCAACTTTGACACTCCCCAGCTAAAGTCCGCTGCCCACAGC
GAGGGTTACCGCACCTTTTGCTGTGGTCCATGCAAGACGGATCCTTTAAA
ACTGGAGCTGCACCTTCCACAAGCAGGCTACGTTCCTGGCCAGAAGATTC
CCGTGACCATTGTGGTAGTCAACAACACTGCCGTAGCCGTCTCCGAAATC
CGACTCTCTCTGGTAATGCTGGTGAGATACTACAGCGTCAGTCCTGAACA
CTCTCGAGTGGAGCGATTAATAATATCGCGAGCTAAGGGGGAATCGGTGC
TGAAGCAGTGCACCCGATCCCAGACCATCGATTTGCCCGTACCCTCAACG
CCGCCCACCTGCGTGGAGTTGAGCAACCTCATCCAGATCGCCTACCAACT
GGAGGTTGAGCGTTGGTTAAGAGTCTACGCGAACAACAGCTGATGGTCAT
GCCGGTTACCGTTGGCACCATTCTCTGGCGGTTTCGGCATTGTGGTCACA
TCTCCGGCGGAGCGCCCACTACGAGACGGATCAGAGATCCTCCCGACGAG
CTACCCATGCTACCGCCTTGAAGCTGCCCAGCGAACTGGCATCATGCTGC
TGATCCACGCCTCCCATTAGAAGGATCGGTCAACTCACGGGCAA
UFO09462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18747-RB | 1408 | CG18747-RB | 46..1113 | 9..1054 | 4795 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7781654..7782152 | 974..484 | 2190 | 97.8 | Minus |
| 3R | 32079331 | 3R | 7782396..7782628 | 485..253 | 1165 | 100 | Minus |
| 3R | 32079331 | 3R | 7782686..7782816 | 252..122 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 7783287..7783401 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:12:02 has no hits.
UFO09462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:30 Download gff for
UFO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18747-RB | 1..1079 | 9..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:12 Download gff for
UFO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18747-RB | 46..1124 | 9..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:16 Download gff for
UFO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18747-RB | 46..1124 | 9..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:16 Download gff for
UFO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7781557..7782150 | 486..1057 | 95 | <- | Minus |
| 3R | 7782396..7782628 | 253..485 | 100 | <- | Minus |
| 3R | 7782686..7782814 | 124..252 | 100 | <- | Minus |
| 3R | 7783287..7783401 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:12 Download gff for
UFO09462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3607279..3607872 | 486..1057 | 95 | <- | Minus |
| arm_3R | 3608118..3608350 | 253..485 | 100 | <- | Minus |
| arm_3R | 3608408..3608536 | 124..252 | 100 | <- | Minus |
| arm_3R | 3609009..3609123 | 9..123 | 100 | | Minus |
