UFO09463.5prime Sequence
1138 bp (1007 high quality bases) assembled on 2011-08-17
> UFO09463.5prime
CAGTCGACATGCCAACAAATGGCCATAAATACAGCATTTTGATGCCCACT
TACAATGAAAAGGATAATTTGCCCATTATAATATGGCTAATTGTGAAATA
CATGAAGGCGAGCGGCTTGGAATACGAGGTGATTGTGATTGATGATGGTA
GTCCGGATGGAACACTAGACGTGGCCAAAGACCTGCAGAAGATCTACGGG
GAGGACAAGATTGTGCTGAGACCACGTGGCTCCAAATTGGGACTCGGAAC
GGCCTACATACATGGCATCAAACATGCCACCGGCGACTTTATAGTTATCA
TCGATGCGGACTTGAGTCATCATCCCAAATTCATTCCCGAGTTCATTAAG
CTGCAACAGGAGGGCAACTATGACATTGTATCCGGCACTCGGTATGCCGG
AAATGGAGGTGTCTTTGGCTGGGACTTCAAGCGCAAGCTCATCTCGCGCG
GCGCCAACTTTTTGTCCCAGGTGCTTTTACGTCCGAACGCCAGTGATTTG
ACCGGCTCCTTCAGGCTCTACAAGAAGGATGTACTGGAGAAATGCATTGC
CAGCTGCGTGTCCAAAGGCTACGTGTTCCAAATGGAGATGCTCGTTCGGG
CTAGACAGCACGGCTACACCATCGCCGAGGTGCCCATCACCTTCGTGGAC
CGTATTTATGGCACCTCCAAGCTCGGCGGGACCGAGATTATTCAGTTTGC
CAAGAACCTTTTGTATCTGTTTGCGACCACAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACAATAAAAAACGCCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGAATGGAGTTCTGAGTCATTACTGGATCTATCACCAGGAGTCCAAGCGA
GCTCGATATTAATACGCCCCGCCCTGCACTCATCGCAGTACTGTGTATCA
TAGCATTCTGCGACATGAAGCCATCCCAACGCATGATGACCCTGATCGCC
AGCGCATATCGCACCTGGCCGCCTTGCGTAATAATTTTGCCATGGTGAAC
GGTGCCAGAAGTTGTGTCTATCATGTGGCCTAGCTTAA
UFO09463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10166-RA | 810 | CG10166-RA | 45..767 | 9..731 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19525477..19525888 | 731..320 | 2045 | 99.8 | Minus |
| 2L | 23513712 | 2L | 19525953..19526165 | 323..111 | 1065 | 100 | Minus |
| 2L | 23513712 | 2L | 19526221..19526324 | 112..9 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:12:11 has no hits.
UFO09463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:31 Download gff for
UFO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10166-RA | 16..751 | 1..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:16 Download gff for
UFO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10166-RA | 37..772 | 1..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:19 Download gff for
UFO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10166-RA | 37..772 | 1..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:19 Download gff for
UFO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19525472..19525884 | 324..736 | 99 | <- | Minus |
| 2L | 19525953..19526163 | 113..323 | 100 | <- | Minus |
| 2L | 19526221..19526332 | 1..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:16 Download gff for
UFO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19525472..19525884 | 324..736 | 99 | <- | Minus |
| arm_2L | 19525953..19526163 | 113..323 | 100 | <- | Minus |
| arm_2L | 19526221..19526332 | 1..112 | 96 | | Minus |
