UFO09471.5prime Sequence
1118 bp (1022 high quality bases) assembled on 2011-08-17
> UFO09471.5prime
CAGTCGACATGAGTAGAGTTATTAATGGCTTTAAAAGTGCTGTAAAAGCT
ACAAATTATACACCGCTTGTTAGAAATGCAGCACAATTTAATCAATTCCA
GTTGCCAGAAATACGGAAATTTTCAGTTGAATCTTCGCCGGCTTGTTGGA
ATTGCCAAAAGAAATCGGAATTAAAGCAGAATATGATATGTTCGGACTGT
GGACACTTGCAGGATGTTAACTCAGGAATAAATTACTTTAAACTGCTCAG
CTTTCCCATTCAATTTTCTTTGGAGTCCCAGAAGTTGACAAGAAGTTTTC
GCCAGTTGCAGACCATTGTGCATCCCGATAAATATAGTAATAAAACCTCA
CGGGAGCAAACAAACTCCTCAGACTGGAGTTCCCTCATCAACAAGGCATA
TAAAACGCTTTCCACGCCCATAGATCGTGGTCAGTACCTTCTTCAACTGG
AGGGCGAACAGATGCCGCAGGATAATAGCGCTCTTAACAAAGAGTTTCTC
ATGGCCATGATGGAGCGGAACGAGGAGGTGGAGGATGCGGAAGACACCCA
AACGCTGGAGAATTTAAATATTCAGCTCATCAAGGAACTGGAGGAGATGG
CCCGGAAGTTAAATGCCCTTTTCGATAGCAAAGATCTTTCGGGAGTCAAA
GAAACCCTCGTAGAGATGAAGTACCTGCTGAGTATTCAGAACAGCATTAA
ACAGAAGCAACAAAGTTTGCTGGGCAGCGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCGTAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCTTCGCAGTACTGTTGTAT
TCATTAGCATTCTGCCGACATGGAAGCCATCAAAACGGCATGATGGACCT
GATCCGCCAGCGCATCAGCACCTGTTCGCTTGGAAATATATTGGCCATGG
TGAACGGGGCAAGAAGTG
UFO09471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc20-RA | 927 | CG34246-RA | 70..789 | 9..728 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16233643..16234027 | 344..728 | 1925 | 100 | Plus |
| 3L | 28110227 | 3L | 16233196..16233417 | 9..230 | 1110 | 100 | Plus |
| 3L | 28110227 | 3L | 16233470..16233582 | 231..343 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:11:34 has no hits.
UFO09471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:28 Download gff for
UFO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34246-RA | 70..802 | 3..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:58 Download gff for
UFO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc20-RA | 63..795 | 3..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:02 Download gff for
UFO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc20-RA | 63..795 | 3..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:02 Download gff for
UFO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16233189..16233417 | 3..230 | 98 | -> | Plus |
| 3L | 16233470..16233582 | 231..343 | 100 | -> | Plus |
| 3L | 16233643..16234034 | 344..738 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:58 Download gff for
UFO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16226289..16226517 | 3..230 | 98 | -> | Plus |
| arm_3L | 16226570..16226682 | 231..343 | 100 | -> | Plus |
| arm_3L | 16226743..16227134 | 344..738 | 98 | -> | Plus |
