UFO09472.5prime Sequence
1071 bp (873 high quality bases) assembled on 2011-08-17
> UFO09472.5prime
CAGTCGACATGTTAAATTTAAAACACTTTGCCAGCCACGCCTACCGCCAG
TACGAACTGGTGACGTGCGTGAACATGCTGGAGCCCTGGGAAAAGAAGCT
GATCAATGGATTCTTTCTGGTGATGCTGCTCCTGGTGCTCTTCTCCAGCT
TCATGTATCTTCCCAACTACATGCAAACCCTAATGCAATTTGTAACGCCG
CCCAACTGGCACAATTCCCCGGATAGCGCAGCCTATGTGGCACAAAAGAT
CGCACGGAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAAATAGGCCAGGTTTTCACCGTACACGCACTCTGCGATATAAGTGTA
GAACTGCGGAATCGTCTGTATCACTCAGACGTGAACTTCAGTTGTCTGAA
ACGTGACAGGTGACCTATCCAACACACCACGCTCATGCACGATCGAGACT
CTCAGGGCAATGATAGCGTAACTGGTATTCTCGCTAAAGCTAATCATGAC
GCGTAGATGCATGCGATGCATGCTCAGCTGATCACGGTACGTTTCCTATC
TACGATCATCACATAATATCAATGCTACGTGCAGGATAGTAACAGCATCA
GCAGTCCCAGTCAATCCTCCC
UFO09472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34293-RB | 740 | CG34293-RB | 48..299 | 9..260 | 1260 | 100 | Plus |
| CG34293-RA | 446 | CG34293-RA | 48..299 | 9..260 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27165216..27165370 | 260..106 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 27165432..27165528 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:43 has no hits.
UFO09472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:29 Download gff for
UFO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34293-RA | 40..309 | 1..272 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:03 Download gff for
UFO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34293-RA | 40..309 | 1..272 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:06 Download gff for
UFO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34293-RA | 40..309 | 1..272 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:06 Download gff for
UFO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27165216..27165370 | 106..260 | 100 | <- | Minus |
| 3R | 27165432..27165536 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:03 Download gff for
UFO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22990938..22991092 | 106..260 | 100 | <- | Minus |
| arm_3R | 22991154..22991258 | 1..105 | 96 | | Minus |
