UFO09478.5prime Sequence
1132 bp (975 high quality bases) assembled on 2011-08-17
> UFO09478.5prime
CAGTCGACATGTCTCATCGTAAGTTCTCGGCACCCCGCCATGGCTCCATG
GCCTTCTACCCCAAGAAGCGCTCAGCTCGCCATCGCGGTAAGGTTAAGGC
CTTCCCCAAGGATGACGCCAGCAAGCCAGTCCATCTGACCTGCTTCATCG
GCTACAAGGCCGGCATGACCCACATTGTGCGCGAGGCCGATCGTCCTGGC
TCCAAGATCAACAAGAAGGAGGTGGTCGAGGCCGTCACCGTTCTGGAGAC
CCCGCCCATGATTGTGGTCGGTGCTGTCGGCTACATCGAGACTCCCTTCG
GTCTGCGTGCCCTGGTCAACGTTTGGGCCCAGCATCTCTCCGAGGAGTGC
CGTCGTCGCTTCTACAAGAACTGGTACAAGAGCAAGAAGAAGGCATTCAC
CAAGGCCAGCAAGAAGTGGACCGATGATCTCGGCAAGAAGAGCATCGAGA
ATGACTTCCGCAAGATGCTGCGCTACTGCAAGGTGATCCGTGTGATTGCC
CACTCGCAGATCCGCTTGATCAAGCAGCGCCAAAAGAAGGCCCATGTCAT
GGAGATCCAGCTGAACGGCGGCTCCATCGAGGACAAGGTCAAGTGGGCTC
GCGAGCATTTGGAGAAGCCCATCCAGGTCAGCAACGTCTTCGGCCAGGAC
GAGATGATCGACTGCGTTGGTGTGACCAAGGGTAAGGGTTTCAAGGGTGT
CACCTCGCGTTGGCACACCAAGAAGCTGCCCCGCAAGACGCACAAAGGGT
CTGCGCAAGGTGGCCTGTATTGGTGCCTGGCATCCGTCGCGTGTGTCCAC
CACCGTGGCCCGTGCCGGTCTGAGGGTTACCACCACCGTACCGAGATCAA
CAAGAGATCTACCGCATCGGCGCTGGCATCCACACCCAAGGACGGCAAGG
TCATCAGGAACAACGCCCTCCACCGAGTACGATCTGACCGACAGAGCATC
ACGCCCATGGGTGGCCTTCCCCAACTAACGGTGAGTCACAACGACTTCGT
CATGATCAAGGCTGCCTGCATCGGCTCCAGAAGCGCATCATCACCCTTGC
GCCAGTTCCCTGCTGAAGCACACCAGCGCCTCCTGGCCTTGAAAGCAGAT
CAGGCTCAGTTCATCGAAACCCTCGGTCCAGA
UFO09478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL3-RH | 1610 | CG4863-RH | 34..1146 | 6..1121 | 4990 | 97.4 | Plus |
| RpL3-RA | 1381 | CG4863-RA | 34..1146 | 6..1121 | 4990 | 97.4 | Plus |
| RpL3-RG | 1688 | CG4863-RG | 708..1453 | 373..1121 | 3155 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11223856..11224249 | 508..901 | 1765 | 98.7 | Plus |
| 3R | 32079331 | 3R | 11222174..11222367 | 11..204 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 11222561..11222732 | 205..376 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 11223394..11223530 | 373..509 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 11224489..11224665 | 898..1075 | 360 | 89 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:12:57 has no hits.
UFO09478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:34 Download gff for
UFO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 32..1118 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:36 Download gff for
UFO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 32..1118 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:36 Download gff for
UFO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 32..1118 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:36 Download gff for
UFO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11222165..11222367 | 1..204 | 97 | -> | Plus |
| 3R | 11222561..11222729 | 205..373 | 100 | -> | Plus |
| 3R | 11223395..11223530 | 374..509 | 100 | -> | Plus |
| 3R | 11223858..11224247 | 510..899 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:36 Download gff for
UFO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7047887..7048089 | 1..204 | 97 | -> | Plus |
| arm_3R | 7048283..7048451 | 205..373 | 100 | -> | Plus |
| arm_3R | 7049117..7049252 | 374..509 | 100 | -> | Plus |
| arm_3R | 7049580..7049969 | 510..899 | 98 | -> | Plus |
