UFO09479.5prime Sequence
1126 bp (987 high quality bases) assembled on 2011-08-17
> UFO09479.5prime
CAGTCGACATGGGCAACAGTGCATCTCAAGGAGTTGCAGCTCCAAGTGTT
TCGGCGGCCCACCCGTTGACCACCGCATCCGCAGCCACCGCATCCACAAC
CACCGCATCCGCAGCCACCGCATCCGGCGAGAAGCCCAAGTGCAAGGCCT
GTTGCGCCTGCCCGGAGACCAAGAGGGCACGTGACGCCTGCATTGTGGAG
AACGGCGAGGAGAATTGCTTGGCGCTGATAGAGGCGCACAAGAAGTGCAT
GCGCGATGCCGGCTTCAATATCGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATC
TTGCGAATATATGTGTAGAAAACTGCCGGAAATCGTCGTGGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGG
TGAACACCTATCCCATATCACCAGCTCAACCGTCTTTCATTGCATTACCG
AAATTCCGGATGAGCATTCATCAGGCGGCAAGATGTGAATAAAAGCCGAT
AAACCTTGTGCTTATTTTCTTTACGTTCTTTAAAAGCGTATATCAGCTGA
CCGTCTGATTATAAGGTACATGAGCACTGACTGAAATGCCTCAAATGTTC
TGTACCATGCAATGGGATATATAACG
UFO09479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9065-RA | 521 | CG9065-RA | 103..366 | 9..272 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15084353..15084534 | 190..9 | 910 | 100 | Minus |
| X | 23542271 | X | 15084184..15084266 | 272..190 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:08 has no hits.
UFO09479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:34 Download gff for
UFO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9065-RA | 57..322 | 6..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:40 Download gff for
UFO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9065-RA | 101..366 | 6..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:39 Download gff for
UFO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9065-RA | 101..366 | 6..272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:39 Download gff for
UFO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15084353..15084536 | 6..190 | 99 | | Minus |
| X | 15084184..15084265 | 191..272 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:40 Download gff for
UFO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14978217..14978298 | 191..272 | 100 | <- | Minus |
| arm_X | 14978386..14978569 | 6..190 | 99 | | Minus |
