UFO09480.5prime Sequence
1144 bp (923 high quality bases) assembled on 2011-08-17
> UFO09480.5prime
CAGTCGACATGACCCCAATGAGCGGACTGCGCCAACAGCTAAAGATGCTG
GGTACAGCATTGCTGGGCAAACGGGCCACCAAGTCTGTCAAAAAGAAACC
ATTTACGGAGGTGGAAATCAAAGATCTACGCACAGCATTCGATCTACTAG
ACAGAAATCGCGACGGTCGCGTCACCGCCAACGAGCTGCAGTTTATGCTA
AAGAACCTGGGCATAAACGTGAGTGACGAACTCATACACGATCTCATACG
TGAGGCGAGCCACTCAGGCAATGGCTTAATCAACGAGGCCGAGTTCCTGC
AATGGGTGGGCAGGATCCAGGCGCTGCGGGACGAGCAGCATTCACATGAG
GACAGCAAGGACAGCAAGCCGGTGGACGAGGCCGATGATGTCACCGAGGA
CTTGATAGCCGCATTTAGAGTATTCGATCGGGATGGCAATGGGTTCATAA
CGCGCGACGAGCTGCAGACCGCCATGGAGATGATTGGGGAGCCCTTGAAC
GAGCAGCAGCTGGAGCAGCTGCTGGTCATCGCGGACTTGGACCAGGACGG
GCGCATCAATTACGAGGAATTCACGAGACTTTTGCTCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCAAGATGGAGTTCTGAGGTCATTTACTGGATCTATCAACAGGAA
TTCAAGCGGAGCTCGATATCTAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTTGTTTGTAATTCATTTAGCATTCTGCCGACATGGAAAGCCATCCA
CAACGGCATGATGAACCTGAATCCGCCAGCGGCATCAGCACCCTTGTCGC
CTGGCGTAATAATATTTGCCCATGGTGAAAACGGGGGCGAAAAGTTGTCC
ATATGGCCCACGTTTAAATCAAAACTGGTGTAAACTCCACCCAGGGATTG
CCTGAAGACGAAAACCAATTTCTCCAAGAACCGTTAAGGAAATAGGCCAG
GTTTTCACCGTACCACGCCCACATCTTGGCGAATTATGTGTAGA
UFO09480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip63F-1-RA | 1139 | CG15855-RA | 356..934 | 9..587 | 2880 | 99.8 | Plus |
| Eip63F-1-RC | 880 | CG15855-RC | 133..675 | 45..587 | 2715 | 100 | Plus |
| Eip63F-1-RD | 2777 | CG15855-RD | 390..855 | 122..587 | 2330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3913852..3914005 | 418..265 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 3913626..3913776 | 567..417 | 755 | 100 | Minus |
| 3L | 28110227 | 3L | 3919883..3920029 | 268..122 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 3930813..3930854 | 123..82 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 3930958..3930998 | 83..43 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:17 has no hits.
UFO09480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:35 Download gff for
UFO09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63F-1-RA | 351..939 | 1..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:44 Download gff for
UFO09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63F-1-RA | 351..939 | 1..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:44 Download gff for
UFO09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63F-1-RA | 351..939 | 1..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:44 Download gff for
UFO09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3911890..3911914 | 568..593 | 92 | <- | Minus |
| 3L | 3913626..3913774 | 419..567 | 100 | <- | Minus |
| 3L | 3913852..3914002 | 268..418 | 100 | <- | Minus |
| 3L | 3919884..3920027 | 124..267 | 100 | <- | Minus |
| 3L | 3930813..3930852 | 84..123 | 100 | <- | Minus |
| 3L | 3930958..3930996 | 45..83 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:44 Download gff for
UFO09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3913852..3914002 | 268..418 | 100 | <- | Minus |
| arm_3L | 3919884..3920027 | 124..267 | 100 | <- | Minus |
| arm_3L | 3930813..3930852 | 84..123 | 100 | <- | Minus |
| arm_3L | 3930958..3930996 | 45..83 | 100 | <- | Minus |
| arm_3L | 3911890..3911914 | 568..593 | 92 | <- | Minus |
| arm_3L | 3913626..3913774 | 419..567 | 100 | <- | Minus |
