UFO09486.5prime Sequence
1091 bp (992 high quality bases) assembled on 2011-08-17
> UFO09486.5prime
CAGTCGACATGTTTGGCCCGCTGCAGATTATCGTTTTTGCCACTATCTTG
GTGGCCGTGGCCATGGCCATGCAGCCACTGGAGGACAATGAGCGAACCCA
TCATCTGAACCACAAGCGCCAGTTGTCGCAACAGCACCACCACCACCACC
AAAAGCTCCAGGAGGTGAGGCATTCGGGCCATGATAGTCTGAAACATGGT
GGTTCCCACGTTAAGGAGCATCAAGCGCATCACTCTGAGCGAAAGGCCAG
GCAGAGCCACAAGGAGCCGGGCCACAAGAAGAGTCACCACCAGAAGGAGC
ACCGCCAGCAGCAGGACAACCACACCCGCAAATCCCGATCGCATTCCAAG
GGCAGCAAGCAGCATCACAAGCGGCACACGGGATCGCGTCGCCACGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGATTGGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGCCAGGTTT
TCACCGTAACACGCACATCTTGCGAATATATGTGTAAGAACTGCCGAAAT
CGTCGTGTATTCACTCAGAGCGATGAAAACGTTCAGTTGCTCATGAAACG
TGTACAAGGTGAACACTATCCATATCACAGCTCACGTCTTTCATGCCATA
CGAAGTCGATGACCATTCATCAGCGTCAGATGTCATAAGCC
UFO09486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34232-RB | 831 | CG34232-RB | 229..615 | 9..395 | 1935 | 100 | Plus |
| CG34232-RC | 775 | CG34232-RC | 190..559 | 26..395 | 1850 | 100 | Plus |
| CG34232-RA | 702 | CG34232-RA | 117..486 | 26..395 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12165125..12165511 | 395..9 | 1935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8578..8619 | 293..334 | 111 | 73.8 | Plus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 696..737 | 293..334 | 111 | 73.8 | Plus |
UFO09486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:03 Download gff for
UFO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34232-RB | 189..578 | 5..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:06 Download gff for
UFO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34232-RB | 206..595 | 5..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:32 Download gff for
UFO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34232-RB | 226..615 | 5..395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:32 Download gff for
UFO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12165125..12165514 | 5..395 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:06 Download gff for
UFO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8052630..8053019 | 5..395 | 99 | | Minus |
