UFO09488.5prime Sequence
1104 bp (998 high quality bases) assembled on 2011-08-17
> UFO09488.5prime
CAGTCGACATGACCAAAGTTGAGCTATACAAGTCGCGCGTCTTTGTGACA
ATCATACACCTGTGTGCACTCGGCCAATTCGCCTATGGACTCTACTACAG
CTCCTTCGAGATCCAAAGGAGCTACAAACTGAAGACGAGCCTCAATCGCC
GCCTGGTTCCCGAATCGCTGCCCCAGAAAATCAAATTGCTGTCCTACTGG
TCGCTGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTT
CGTGGGCACTAATGAGCTGACACCCAAGAAACCTCCGGCGGTTCGCAGGT
TCAAGGACTGGCTGATGGCTACATTGGCCTTTCCAGTGGCTATCAATGTG
GGCGTGACCTTCTGGACACTGTACGCTATCGACAGGGAGCTAGTCTTCCC
CAAGGTTCTGGACCCCGTGTTCCCCAGCTGGCTCAACCACGTCCTGCACA
CCAACATAGTGGTTTTCATCATCCTGGAGCTGTTCATCTCGTACAGGTCG
TACCCAAAACGAAGCCAAGGACTCGCAGGACTGGCCATTTTCATGGGCGC
CTACCTGGTTTGGATTCACGTGGTGAAGCACTACTCGGGTGTGTGGGTGT
ATCCAGTGCTCGAGGTTCTCCAGCTTCCGCAACGCATCCTGTTTTTTGCG
GCCGTCGTTGGATTCACGCTGTCACTTTACCTGCTGGGCGAGTTCCTCAA
CAATACCGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCGCAAATCCAACG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATTATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGATCT
ATCAACAGAGTTCAAGCGAGCTCGATATCAATTACGCCCCGGCCTGCCAC
TCATCGCCAGTACTGTTGTTATTCATTAAGCAATTCTGCGGACATGGAAG
CCCATCAAAACGGCATGAATGAACTGAATCGCCACGTGGCATCAGCCCTT
GGTT
UFO09488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3625-RE | 1401 | CG3625-RE | 157..897 | 9..749 | 3705 | 100 | Plus |
| CG3625-RC | 1455 | CG3625-RC | 211..951 | 9..749 | 3705 | 100 | Plus |
| CG3625-RB | 1341 | CG3625-RB | 294..837 | 206..749 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 283889..284213 | 749..425 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 284748..284969 | 427..206 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 290809..291010 | 210..9 | 995 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-27 00:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 57..94 | 797..835 | 111 | 79.5 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7095..7132 | 797..835 | 111 | 79.5 | Plus |
UFO09488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:03 Download gff for
UFO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3625-RC | 1..741 | 9..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:09 Download gff for
UFO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3625-RC | 205..951 | 1..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:36 Download gff for
UFO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3625-RC | 205..951 | 1..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:36 Download gff for
UFO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 283889..284210 | 428..749 | 100 | <- | Minus |
| 2L | 284748..284968 | 207..427 | 100 | <- | Minus |
| 2L | 290813..291016 | 1..206 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:09 Download gff for
UFO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 283889..284210 | 428..749 | 100 | <- | Minus |
| arm_2L | 284748..284968 | 207..427 | 100 | <- | Minus |
| arm_2L | 290813..291016 | 1..206 | 98 | | Minus |
