UFO09495.5prime Sequence
1113 bp (997 high quality bases) assembled on 2011-08-17
> UFO09495.5prime
CAGTCGACATGAGGTGGGAATTTCTGCCATGTTTATTATTGCTCATTTCA
AACAATAAAATCTTTGGTTTTAAAGTACCCAGTATTAATTTTGAAATGCT
AAAGGATGAAGGATTCGAAGTGTCCATACCAGATGAGCCTGGCATACAGC
GGGTGTTCTACATGTTCCAAATTGACGACACCTGCCCGGCTCTAATGGAC
TACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAGATGAG
TCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTTCAATG
AGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCCGGCTA
CTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACAGGAGA
GGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACGCTGCA
AGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGGGTGAA
CTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACCACCTG
GAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCTGGTGG
CCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAACTCCAT
ATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAACTGGG
AGATCGCTGTACGGCCGTCGAAAGTCCGGAACAAGAGTGCAACATTGCGC
ACGGCATCTTTCTATAGCATCAAGCTGTCCAGTTTTCTCCGCCCAAATTC
ACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGCGCC
AAGTTGCCCAAAGGGGATTGGCTTTTCCCCTATCTGATGCTCCAACCGGG
TTTCCCACTTACGCGGAAGACCCACTAATGCCAAGCAATTGAAGAATTGC
ATTATGCCCGGTGCAATGCCAAATTTGAGGAACGAACCAGGAAATGAATA
TCTCCGAAACCACTTATATGGCGCGGTGTGCTTGCAACCACGCAATGCAG
TACAGTTCCCTCAGAACAAAAATAAACCAACGCCCTACGGACAGACTTCC
AAACATACCAGAT
UFO09495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP2-RB | 1501 | CG4144-RB | 71..1116 | 8..1059 | 4735 | 97.5 | Plus |
| GNBP2-RA | 1439 | CG4144-RA | 75..1054 | 74..1059 | 4405 | 97.4 | Plus |
| GNBP2-RD | 1341 | CG4144-RD | 36..956 | 133..1059 | 4110 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18674545..18674981 | 565..129 | 2185 | 100 | Minus |
| 3L | 28110227 | 3L | 18674169..18674483 | 881..565 | 1440 | 98.4 | Minus |
| 3L | 28110227 | 3L | 18675215..18675343 | 136..8 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:05:40 has no hits.
UFO09495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:05 Download gff for
UFO09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 78..1012 | 1..942 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:19 Download gff for
UFO09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 78..1012 | 1..942 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:46 Download gff for
UFO09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 65..999 | 1..942 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:46 Download gff for
UFO09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18674545..18674977 | 133..565 | 100 | <- | Minus |
| 3L | 18675219..18675349 | 1..132 | 97 | | Minus |
| 3L | 18674048..18674104 | 882..943 | 91 | <- | Minus |
| 3L | 18674169..18674482 | 566..881 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:19 Download gff for
UFO09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18667645..18668077 | 133..565 | 100 | <- | Minus |
| arm_3L | 18668319..18668449 | 1..132 | 97 | | Minus |
| arm_3L | 18667148..18667204 | 882..943 | 91 | <- | Minus |
| arm_3L | 18667269..18667582 | 566..881 | 98 | <- | Minus |
