UFO09501.5prime Sequence
1097 bp (1011 high quality bases) assembled on 2011-08-18
> UFO09501.5prime
CAGTCGACATGTCTGGCGGAACGCAAGGGATTCGCAAGCTGGCGGATAAG
CTATTCACACCCAACGAAATTAGACGTTTCCAGGCATACAAGAACCGCCT
CAGTGAAAAGTATTTGACCGTGGAGGGCTTAAAGTCCACCTTCAAGAGAC
CGGATTTGGGAAAACTATTCAACCGTCGCGTGTTTTCATCAAACAAAGAA
GATTGCCCCGAAGAGCCAAAAGTTAAGGAATGTGACCCCAGCTGGGATGA
GCTGTATCCTCCAGGCCCGCCATACGAGCCCTATGACACACACTACTGGT
ATCCAGATCCCGAGTTCATGAATAAACAACAGTATATAGTTTGGTATCCC
GAAGGTGACGAGTGGAAAAAGCGTCCCAATTTTAAGGGAAAACAGATTCC
ACCCGTTGATCGTACATTTCGCACCAAGCTCATAAACTTTGGACCCGCGC
ATCCGGCGGCACACGGAGTACTCCGCATGATCCTCGAGCTGGATAATGAA
ACGGTGCTGAATGCCGATCCGCACATTGGGCTACTGCATCGCGGAACCGA
GAAACTGATCGAGTACAAGACGTACACTCAAGCACTGCCCTATTTCGATC
GTCTGGACTATGTGTCCTGCATGGCCAATGAGTTGGCCTACTGCTTGGCG
GTGGAGAAGTTGCTGAATGTGGAGGTTCCACGCCGGGCCAAGTACATACG
CACCATGTTTTCGGAGATAATGAGGCTGACGAATCACACGATGGCCATTG
GTTCGTCGGTACTGGACTGTGGAGCTATAACTCCACTCTTTTGGCTGTTC
GAGGAACGTGAGAAGTTGTATGAGTTTTCGGAACGCGCTTCGGGAGCTCG
TCTCCATGCCGCCTACATTCGACCGGGGGGCGTGGCCAGTGATATACCTC
TAGGGTTTCTCCACGATTTGTATCAGTTTATCATCATTCACGACGATTGA
CGAGTGAGGACGTATGACCGATATCGCATCTGGCGTATGCGTATTTGGCA
TTGGAGTCATATCCGCCACACGATGCCTAACTTATGGATGCACTGACCCG
TTCTGAGGCCCCCCGGCGTAAAGTGGATTTGCGTAGCCACAGCCTAC
UFO09501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11913-RB | 1700 | CG11913-RB | 23..1123 | 8..1094 | 5035 | 98.1 | Plus |
| CG1970-RB | 1584 | CG1970-RB | 383..543 | 450..610 | 250 | 77.8 | Plus |
| CG1970-RA | 1573 | CG1970-RA | 372..532 | 450..610 | 250 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25358548..25359437 | 199..1076 | 3730 | 97.2 | Plus |
| 3R | 32079331 | 3R | 25358307..25358500 | 8..201 | 970 | 100 | Plus |
| 4 | 1348131 | 4 | 570067..570165 | 610..512 | 240 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:27 has no hits.
UFO09501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:36 Download gff for
UFO09501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 16..1127 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:50 Download gff for
UFO09501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 16..1127 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:48 Download gff for
UFO09501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 16..1127 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:48 Download gff for
UFO09501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25358300..25358500 | 1..201 | 98 | -> | Plus |
| 3R | 25358551..25359461 | 202..1097 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:50 Download gff for
UFO09501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21184022..21184222 | 1..201 | 98 | -> | Plus |
| arm_3R | 21184273..21185183 | 202..1097 | 97 | | Plus |
