UFO09502.5prime Sequence
1119 bp (1018 high quality bases) assembled on 2011-08-18
> UFO09502.5prime
CAGTCGACATGGAGTTTGCCCGCCGAGTTTCCGCTCGCTTTGAAACCAAA
AGACTGCCGGAGGATGTGGACGATGGCCTGGAGACGCTGGAGGAGTACAA
GCAGCGCTGGCGCTCCGTCCGCATCATCTACTTTACGATGTTTCTGATGG
CGCTTGGCTTCAGCATCATACTCACAGGCATTTGGCCCTACCTCAACAAG
CTAGATCCCGATGCGGGCAAGGAGTTTATGGGACTGATTGTGGCCGCCAA
TCCGCTGGGACAAATGATCTTCAGTCCGATCTTTGGGTGGTGGGGCAACA
AGCTGGGCAAGATTCGTCTGCCACTGCTGCTATCGCTGTCTCTATTCACG
CTGGCCAGTGGCATATACTCCTCGCTGGAACTGCGTCCGGACAATGTGAA
GTACTGGATGCTCTCCTCGCGGTTCCTCATCGGTGTCAGCTCGGCGAATA
TTGCCCTGTGCCGCTCCTATTTGTCCGCTGCGACACGAATCAGCGAACGC
ACACATGCCGTTGCAATGGTTTCGCTGGCACAGGTCCTTGGATTCATCAT
TGGTCCAACTCTGCAGGCGGCAGTCACACCGCTGGGAGATCAGGGACACG
TCTGGCTGTGGGGCAAGATGCACTTCAACATGTACACGGCATCCGGATGG
ATCAATGTGCTGATGAGCATTGGAAACTTCATGATGTTCCTGCCCGGAGT
GTTTGAGGAGCACAAAATTGCAGCTCGCGAGGTGATGGTGATGCAGGGCG
GCACATCCGAGAAGGAGACTTGGAAAGGCATCAAGCCCAGCTATTTATCC
GCATGGACTTTGATCGTCGCCTTCTTTGTTCTGGTATTCAACTTTGTGCT
GTTGGAGACTCTGGGCACATCCCTGACATGGATATGTTCGCTTGGTCCAA
CGACGAGGCCCTATGGTACATGGGCATCATGATGACACGCAGCTATGTCT
CCCTGGTCACGTTCGTTTGATGGAGCCATGGTGCAGATTATAGCCGAGCG
TATGTTGCTCATTCTGGGGGCGGATTCTCCGCTGATGTTTTCTCCGTCCG
CGTGTCTCTTCTGCCTTGGGGTCCGAATCCGCCAAGATTGAGCGCAGCCA
TTCTATGCAAGCTGAACAT
UFO09502.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8596-RC | 2114 | CG8596-RC | 380..1485 | 9..1114 | 5020 | 97.8 | Plus |
| CG8596-RB | 1821 | CG8596-RB | 87..1192 | 9..1114 | 5020 | 97.8 | Plus |
| CG8596-RA | 1875 | CG8596-RA | 141..1246 | 9..1114 | 5020 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7343103..7343612 | 708..199 | 2550 | 100 | Minus |
| 3L | 28110227 | 3L | 7343668..7343859 | 200..9 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 7342892..7343045 | 859..706 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 7342578..7342832 | 1114..860 | 430 | 86.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:36 has no hits.
UFO09502.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:36 Download gff for
UFO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 139..1250 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:55 Download gff for
UFO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 141..1252 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:52 Download gff for
UFO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 141..1252 | 9..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:52 Download gff for
UFO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7343668..7343859 | 9..200 | 100 | | Minus |
| 3L | 7342892..7343043 | 708..859 | 100 | <- | Minus |
| 3L | 7343104..7343610 | 201..707 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:55 Download gff for
UFO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7336768..7336959 | 9..200 | 100 | | Minus |
| arm_3L | 7335992..7336143 | 708..859 | 100 | <- | Minus |
| arm_3L | 7336204..7336710 | 201..707 | 100 | <- | Minus |
