UFO09504.5prime Sequence
1099 bp (998 high quality bases) assembled on 2011-08-18
> UFO09504.5prime
CAGTCGACATGTCGCTGAAACACCAGAAGCAATCCTACCAACCGCTCCCA
ACGGCGGCCGCCATGGACAATCCGGCGATGATCCAGAGCAGCGGTAGCAG
TGGGAGCAGCTCCTCTGAGGAGGGCGGGAGTCGTGAGGATGTGGCCAATC
TATCGCCGCTCGGACTGCCTACGACCTACTCGTCACAGCAATTGATGCCC
TCGGATACGGACAGCATGGAGGAGGAGCGGCACCGACTGCGTCCCCACCA
CCATCACCACCACCCACTGGGCGAGCACCACCACATCCCGGGCATACCAC
CATCCGCCGTCGTGCCATCGCGTCTCTCCAGCGTGGGCAGATCGCAGTGG
TTCACCGTTACCGTGCTATGCTTCGTCAACCTCATCAACTACATGGATCG
CTTTACGATCGCAGGAGTTCTCACAGATGTCCGAAATGATTTCGATATTG
GCAATGATAGTGCCGGACTTCTCCAGACGGTCTTCGTTATCTCGTACATG
GTATGCGCCCCCATCTTCGGCTATCTGGGCGATCGTTACTCCCGCCCCTG
GATAATGGCGGTGGGCGTGGGTCTGTGGAGCACCACCACCCTACTGGGGT
CGTTCATGAAGCAGTTTGGATGGTTCATCGCCTTCAGAGCGCTGGTCGGG
ATCGGCGAGGCATCGTACAGTACCATCGCACCGACGATTATCTCGGATCT
GTTCGTGCACGACATGCGCTCCAAGATGCTGGCACTGTTCTACTTTGCCA
TACCCGTGGGATCCGGTCTGGGATACATTGTGGGATCCAAGACAGCGCAC
CTGGCCAACGATTGGCGCTGGGCTCTGAGGGTCACGCCCATTCTGGGCAT
TGTGGCAGTTTTCCTCATTTTGCTGATCAAGGATCCGGTGCGGGGTCACA
GCGAGGGATCGCACATTTGGAGCCACTACCTACAGCAGACATCAGCGTGG
TCAGAACCGTTCCTTCATGCTCTCACGCTGATTCACGTGCGTTGCCTTCG
GTGACGGAGCACTGCCTGGTGGGGACTTCCTTCATCTATTCTAGCATGAG
AATGCAGCCCGCCACCGAGACTTGTTCAGAACGACCTCTTCGTTACAGT
UFO09504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spin-RB | 3394 | CG8428-RB | 397..1492 | 9..1089 | 4920 | 97.5 | Plus |
| spin-RC | 3198 | CG8428-RC | 397..1492 | 9..1089 | 4920 | 97.5 | Plus |
| spin-RA | 3007 | CG8428-RA | 397..1471 | 9..1070 | 4910 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16125377..16125783 | 9..415 | 2035 | 100 | Plus |
| 2R | 25286936 | 2R | 16131539..16131899 | 412..772 | 1805 | 100 | Plus |
| 2R | 25286936 | 2R | 16132308..16132619 | 772..1070 | 790 | 91 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:13:46 has no hits.
UFO09504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:37 Download gff for
UFO09504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spin-RC | 388..1463 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:59 Download gff for
UFO09504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spin-RC | 390..1465 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:55 Download gff for
UFO09504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spin-RC | 390..1465 | 1..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:55 Download gff for
UFO09504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16125370..16125782 | 1..414 | 99 | -> | Plus |
| 2R | 16131542..16131899 | 415..772 | 100 | -> | Plus |
| 2R | 16132309..16132626 | 773..1075 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:59 Download gff for
UFO09504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12012875..12013287 | 1..414 | 99 | -> | Plus |
| arm_2R | 12019047..12019404 | 415..772 | 100 | -> | Plus |
| arm_2R | 12019814..12020131 | 773..1075 | 92 | | Plus |
