UFO09505.5prime Sequence
1087 bp (994 high quality bases) assembled on 2011-08-18
> UFO09505.5prime
CAGTCGACATGGACTGCAGAGCGAACTTCCTGGCCTACTTGGCCGTGTTT
CTTCATCTAGTCAGCGATTACTGTTTCGTACCTGTGCAATGCGTGGACGC
ACCCTTCATCCACATTCCGGGCAACGGAGTCATTTCCGGAACCTATCTGA
AGATGTTCCGGACGCAGAACATCAAGGCCTACCTGGGCATTCGCTATGCA
CATGCCAGGAGATTCCAGCCGCCGGATATCGAACTAACACCCTGGAAGGG
CATTTTCAATGCGACCGTCTTCCAACCGGACTGCTGGCAGAACGCCATGC
CTTCCGTGGGCAAAGAAACCGAGCAGATCCTGAAAATCATACAGTCCGAC
TCGAGTGCCCAGGATGCGGAGAGGAAGTACGAGGAGAACTGCTTGTATCT
GAACGTCTTTGTACCTGATGGACTGCCCGAAATCAATGGATACGCAGTTG
TTGTGTGGATCCATTCCGGCGACTTCTCCACTGGCAGTCCGGCGGATGTG
GAGCCATTCCAGTTGGTCTTCAAGCAGAAGGTGATTGTGGTGACCTTCTC
GTATCGGCTGAACATCTTCGGGTTCTTCACCACCGACGACGGCGAGGCCC
AGGGAAACTATGGCCTGATGGACCAGTCAGCCGCGCTCTACTGGGTCAAG
AAGAACATTAATTTCTTTGGCGGAGACTCGAATCGGATTACCCTGATGGG
CCACGATGCGGGGGCCGTGAGTGTGGCGCTGCACATGACGTCGGGTGAGT
GGTCGAAAGGGTGGGTTCCACAAGGCCATCATAATGTCGGGCAATCCGCT
GAGTACCGTCAAATGCCGTACGAGTACGAGGGATCGCTGGACCAGGTGTC
CAGCACCTTCGCCTGTCCGCGAAGGCAACCTCGATGTTTATCCAGTGCCT
GAAGAGGATCGATGCCAAGCGGCTCCTCGGAGAACCTGCCCCAGTGAGCT
GGGGACCCGTGGTGACTTTGGCCTGACAACACTTCCTATCCGGTCATCGA
AAAACCAGCCCGGGAATCTTTCAGAGGCCGCTACACAGGGTGCCGGTCCA
TTATTGGAATGGACCGACATGGAGGAGGGTGCTGAAC
UFO09505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10339-RA | 1963 | CG10339-RA | 51..1132 | 8..1085 | 4915 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24079151..24079734 | 1000..420 | 2565 | 98.6 | Minus |
| 2R | 25286936 | 2R | 24080064..24080477 | 421..8 | 2070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:54 has no hits.
UFO09505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:38 Download gff for
UFO09505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 1..995 | 9..1000 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:02 Download gff for
UFO09505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 42..1046 | 1..1000 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:00 Download gff for
UFO09505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 42..1046 | 1..1000 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:00 Download gff for
UFO09505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24079151..24079733 | 421..1000 | 98 | <- | Minus |
| 2R | 24080065..24080480 | 1..420 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:02 Download gff for
UFO09505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19966674..19967256 | 421..1000 | 98 | <- | Minus |
| arm_2R | 19967588..19968003 | 1..420 | 99 | | Minus |
