UFO09514.5prime Sequence
1141 bp (1018 high quality bases) assembled on 2011-08-18
> UFO09514.5prime
CAGTCGACATGTCGGACGACAAGCGCTTCAACGCGGCGGGCTTTGTAAAG
TGCACGAGAAATCGGACGATAGAATACCTTTATCAGGATCACACGCCGCC
CAACCTGTGGAAACACGCGCCAATTGTGGATCCTCACAATCCCTACGACC
AGGATGAGAAAAAGCAATACAAAATGTTTACGTATCACGTAGAGCATAGA
TACAATACGCTTCTGCCAGATATTCCCTTCGAAAGGCTGAATCTCATTAA
AGAATATGTTCACACAAATCAGGTGAACACCACTGAGATTCTTAATGAGC
ACATGACCACAAAGGAATATCTGGACGAGTATATTGCGCTGGAGAATCAA
ATGCTAGCAGCCCGCTATGGAGCCATTGTCACAAGGAGAAGAAGATTGGT
TGATTCCGCGAGATTTATGGAGGACAATTTGGATGAGGGACTGGCGAAAA
AAATGTGCATGGACAAGAATCTGCCAATGGACACGAACGAAACTGTTCTT
ATTGACCAATCTTTGGTGGATGAAAACAGCAGGTCGTTAACCACAGCCGA
GTCTACGATGGGCATCAGTCAGGCGGAGAACTCTACTTTAAAGAGTAGCG
AAGTCGAGGCGACTTTAAGCGTCAGCCATATAGAAAACTCCTTAAGCGAT
AGCCAAGAAGAGAATCCTCCGCTGAGCAGCACATTAGCCATTAACGAGTC
TAGTGTTCTCGACAGCACGAGAGTGGATCCCATAAAAGATCTCACTCTAG
ATGAACTGTTGCTAATCGATTCAGGATCAGTATGGAAGAGCTTTCCGATA
TTCAAATGCATACAGATTTAGAAGATCAACGCCAGTTGTCGCCCATGTTG
CAGATGGTTAGCCCATCGATGGAGGCAAAAACGCTCAATATCATTGAGAT
GGGATGCTGATCTTATCATGAATGTTCCAAGGGAGTGAGCTATCCTATTC
TGCTGAATGTTATGGGTCTCCCCATAAAACGCCTGGCGTCGGAAATGCAT
CTTTAAACTTCCACCTGGAGTCGACTTATTTCAGGCAAGCACGCCCTTCC
TTTAAGGCGAGAGGACACAAAATCCCACCCACCTCCCGAACTGACTGCAC
TGGAAGAAGCTTCCATGAACGTCGATAATGGACTGATCGTC
UFO09514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-H2-RF | 3976 | CG14685-RF | 807..1901 | 8..1099 | 5070 | 98.4 | Plus |
| Cap-H2-RD | 2933 | CG14685-RD | 572..1666 | 8..1099 | 5070 | 98.4 | Plus |
| Cap-H2-RE | 4015 | CG14685-RE | 807..1615 | 8..815 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10763143..10763951 | 8..815 | 3995 | 99.9 | Plus |
| 3R | 32079331 | 3R | 10764147..10764373 | 813..1041 | 905 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:14:22 has no hits.
UFO09514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:39 Download gff for
UFO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 572..1641 | 8..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:16 Download gff for
UFO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 572..1641 | 8..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:10 Download gff for
UFO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 572..1641 | 8..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:10 Download gff for
UFO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10763143..10763951 | 8..815 | 99 | -> | Plus |
| 3R | 10764150..10764350 | 816..1017 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:16 Download gff for
UFO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6588865..6589673 | 8..815 | 99 | -> | Plus |
| arm_3R | 6589872..6590072 | 816..1017 | 98 | == | Plus |
