UFO09518.5prime Sequence
1140 bp (993 high quality bases) assembled on 2011-08-18
> UFO09518.5prime
CAGTCGACATGAGTTTTCCCAGAACTAACAGCAGGAAATCGCCGTTAAAA
AGAAAGCGACTTAGACCATGTCATCTTGACTATGCTAACGAACGCCTATG
GGAACACAGTTACTTGAGGGAAAAATGCAAGGAGCTAAATTTGGAGGAGG
AGTATAGGTACTACCAGGTCCGTCTGATGGTCAGCAACCTCACAATTTTT
TACGTATTGTTTATAATTCTGGCCATGAGCTTTTTGACAATCGAGTTGCT
TTACGTACAGCACTATAACGCCGTATTCTTTAACTTCGTTATCAGAGTAG
TAAGCACTATCCTGGTTTTAACCGTGTTGAGCATCAATTTTTGCGAAAAA
TTTGTCAGTCGCCACCGATGGGTCATGATAGCCAGCTCAGTGCTATCGGT
ATATCTAGTGGTACTCACAGATATTGTTATGATCTCGTATCACTTTTACA
AGAACGACTGGCCCCTTAATACCTCATTCGATGTCTTCACACTCTGCATG
ATCTACATGTTCCTGCCAATTCCCTCGATCAAGGGAGCTGCCCTTTTGGC
ATCCTCAGTCAGTCTTATATATGTGGCCTTTTTTATGCACTCGCTCACTT
TCAACGCGGTGTACACTGATCGCGATAGTTTCGGCTACGATGTGATATCC
ACTGATATATTACACAACCTGGGTTTTAACATGATGGGCATCTTTTTCCG
CATTATGAACGACACCATGGTGCGCGCATCCTTCTTGGACCGCCATCAGT
TCATCATGGAGGAGACTTGGTTGCGTCATGCCTTGCTACAGGAATCGATA
CTCTTGGACAGCATACTACCGCCTCAAATTGCGAAACCCGTTCAGGAAAA
AATCAAGAGCAAAATAACCCAGTCCGAGACAGCCCCGACCGCTTTCAAAT
GGGTCCGCGAACGACAGAATCCTTCATGGCCATACAAATTCATCCTGATG
TCTCTATCCTGTATGCAGGACGTGGGTGAACTACCCCTCCCTTGACACGA
CATTGACCGGTGGAAACCTGGTGGAGGGTCCTGCACGAACCTTCTCCGGC
GAGATTCGATATCGCTGCCTCCCACTTTAATGCAGCGCATCAGTCTGGGG
AATGGCTACTACTGTGTGGCGGTGGACTACTCCGGATCCG
UFO09518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACXC-RB | 3564 | CG5983-RB | 59..1192 | 8..1139 | 5125 | 97.4 | Plus |
| ACXC-RA | 3505 | CG5983-RA | 59..1192 | 8..1139 | 5125 | 97.4 | Plus |
| ACXA-RG | 3567 | CG17176-RG | 463..1125 | 457..1122 | 355 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12913164..12913887 | 418..1139 | 2775 | 95.5 | Plus |
| 2L | 23513712 | 2L | 12912942..12913104 | 258..420 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 12912747..12912888 | 119..260 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 12912588..12912700 | 8..120 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 12921810..12922202 | 457..849 | 300 | 71.8 | Plus |
| 2L | 23513712 | 2L | 12917497..12917605 | 457..565 | 290 | 84.4 | Plus |
| 2L | 23513712 | 2L | 12917697..12917879 | 657..839 | 240 | 75.4 | Plus |
| 2L | 23513712 | 2L | 12926522..12926610 | 687..775 | 190 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:14:31 has no hits.
UFO09518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:40 Download gff for
UFO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXC-RB | 54..1192 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:20 Download gff for
UFO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXC-RA | 54..1192 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:15 Download gff for
UFO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXC-RA | 54..1192 | 1..1140 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:15 Download gff for
UFO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12912583..12912699 | 1..119 | 96 | -> | Plus |
| 2L | 12912748..12912888 | 120..260 | 100 | -> | Plus |
| 2L | 12912945..12913104 | 261..420 | 100 | -> | Plus |
| 2L | 12913167..12913887 | 421..1140 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:20 Download gff for
UFO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12912583..12912699 | 1..119 | 96 | -> | Plus |
| arm_2L | 12912748..12912888 | 120..260 | 100 | -> | Plus |
| arm_2L | 12912945..12913104 | 261..420 | 100 | -> | Plus |
| arm_2L | 12913167..12913887 | 421..1140 | 95 | | Plus |
