UFO09520.5prime Sequence
1103 bp (1005 high quality bases) assembled on 2011-08-18
> UFO09520.5prime
CAGTCGACATGAATGCGTTCCAGGACTTTGAGCTGGGGGCCAAACTATAT
CTGCAGTGCTTATTATCGCTGAGCAGCTCCCGATCTGCCACGCCATCCTA
CACCTCACCTGTTAACCACGCTGGAGCTTCTCCTCTGAATGCCATTGCCC
ATTCGCCGGTGAATGTGTCCGCCACTCATAGGCAGAACTTTTTCACACCC
ATTGCCAACCAGTCGCAGCAGCAACAGCAGCAACAGCCTGTGGCGGTACC
GCTCGACTCCAAGTGGAAAACAACACCCAGTCCGGTGCTCTACAATGCCA
ACAACAACAGCAGCAATAACAACACCAGCAGCAGCAACAACAACAACAAC
AGTAACTGGGAGGTGGGCAGCAATAGCAATACTCATGTTGCAGCTACGGC
AGCAGCAACATCAACAGTTGGCGCTCAACCACTGCCGCCGCAAACGACAC
CCGTTTCGCTGGTGATGCACGCCCCACCGCCGCAGCAGCAACCACTGCAG
CAGCAGCACCACCATCACCAACCGCCTCCACCGCCACCTGCTAGTTTGCC
AGCGCCATCGGCACCACCCACCAGCGGCAGCAGCAGCAGCCACAACAGCG
TGGGCCATGCCACCAGCGTTATACGCATTTCGAGCAGCCAACAGCAACAT
CAGCAGCAGCAACAGCACCAACAGCAGGCACATCCACATGTGGTGGTGAG
CGGCGGACAGACTTTTCATCCCGTAATCGTGGACGCTACTCAGCTATCGG
TGCCGCTGCCACCCACAACGGTTTCATTTCATCAGCCCAACACGCCCACC
TCAACAGCGGCATCAGTGGCTTCAATGAGCCAGGACAAGATGCTGGCAAA
AACGGCTACAATGCGCCCTGCTTCAAGCTGTTGCCGCATATGACGCCAAT
GAGCAGCGTCGCCAGCTCGTCACTCGACCCTACCACATCGGCAGCAGTTA
CAACGTGTGATGATGCACAGCAGCAGCAGCATCAGCAGCTTCACTACAGC
AGCAACTGCAGCAGCAGCACAGTCGCCACCCGATGGCGCTGACCAACACA
TCATCTGAATTGTGTCGCCCACTTAGCTCCGGCCAAGCCACTCACTGTCA
TGA
UFO09520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cic-RC | 5152 | CG43122-RC | 205..1313 | 8..1094 | 4925 | 97.4 | Plus |
| cic-RB | 6454 | CG43122-RB | 205..1313 | 8..1094 | 4925 | 97.4 | Plus |
| cic-RA | 5167 | CG43122-RA | 205..1313 | 8..1094 | 4925 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20293602..20294390 | 64..852 | 3945 | 100 | Plus |
| 3R | 32079331 | 3R | 20294553..20294741 | 854..1031 | 435 | 93.1 | Plus |
| 3R | 32079331 | 3R | 20293448..20293503 | 8..63 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..3011 | 305..1045 | 461 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7079 | 299..666 | 425 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7197 | 216..676 | 352 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2913 | 477..1030 | 342 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2839 | 215..685 | 339 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2856 | 467..1029 | 322 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6421..6923 | 184..669 | 312 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2932 | 208..688 | 305 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7033 | 391..677 | 289 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2640..3040 | 299..694 | 261 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2631..3012 | 207..596 | 232 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2470 | 550..688 | 227 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6899 | 474..599 | 226 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6957 | 215..422 | 221 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2219..2520 | 290..599 | 209 | 56.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1154 | 295..415 | 204 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..7040 | 208..447 | 192 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..7199 | 199..537 | 167 | 55.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1170 | 482..612 | 153 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1175 | 473..597 | 144 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1581 | 483..525 | 134 | 79.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 886..999 | 486..599 | 119 | 61.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8631..8662 | 569..600 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9087..9226 | 405..540 | 113 | 57.4 | Plus |
UFO09520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:41 Download gff for
UFO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RC | 175..1238 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:41 Download gff for
UFO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RA | 196..1259 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:23 Download gff for
UFO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RA | 196..1259 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:23 Download gff for
UFO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20293439..20293503 | 1..63 | 93 | -> | Plus |
| 3R | 20293602..20294393 | 64..854 | 99 | -> | Plus |
| 3R | 20294554..20294758 | 855..1045 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:41 Download gff for
UFO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16119161..16119225 | 1..63 | 93 | -> | Plus |
| arm_3R | 16119324..16120115 | 64..854 | 99 | -> | Plus |
| arm_3R | 16120276..16120480 | 855..1045 | 91 | | Plus |
