UFO09521.5prime Sequence
1067 bp (954 high quality bases) assembled on 2011-08-18
> UFO09521.5prime
CAGTCGACATGCATTGGCTAGTTCTGATACTAGTGCCCCTCGTCTGGGCC
AATAGCAGTGATCTAAAGGGAGCACCTGTGATGACCACAGTAGCCCCGAC
TGGCGGTCATCGAAGTCCCCATCAGCAGCAGAGATTGCAGCAATTGCAGG
AGGCGCAACAACTGGAGGCCCATCAGCAGCACCATCATCATTTGCGGCAC
GAACAGCATCTGCGGGCCGAACTGGAGGGCAACCATCAGCCGCCGATCGA
GGATGTCGAGAAGAAGGCCTTCCTCGATCCCCAATTGCCCATGCAGCAGC
ATCACTTGCGTCATCACAATCGTCATCATGCGAGCTGGGAGCAGCGGGTA
TTTCCCTCGCTGCGTCATCAGCAGCACCGCTTGTCCATCGGACCGAGCAC
GGCCAAGAACCTAATGACCACCGAGGCACCCACAACCAGGCACCATGGCC
TGATCTCCAATCACAGTCGCTATTTTGACAGGGACGGCATCTTTCCATCC
TGGGCTGAGCCTCGAACCACCAGAGGTCCCAATTGGCGACAGGAGGTGGA
CTCGAGTGATTCCGACGAGGACAGCGATGAGGATGACGAAGATGACTACG
ATGAGTATGATGAGGATGGCGATACCTCGAATGGCGTTGATGAGGAACTG
GCCCGACAAATGCCCAGATATTCGCTGTTCACCCAGAAGTTGCCACACAT
CGATTTAAAGGATACCGATTACAATGCGTACGACCAGTCGGATGAACTGG
ACATAGTTTCGAGTAGCAATCGCAACAGCAACAAGTATCCCAGCGTGGCC
CATCCGCACGACAAGTCTGCTGGCAAGCGGATATATTCGATTGGCTGTTC
AAACATGATAGGGAAAAGAGCTGTAAAAGCACACATCACAACTACTTCAC
GACACACACTCACACAGCACAGTAAAGCCACAATATGCGACGAAAGCAAA
CTGCATATGATGCCATCTAGATGGCGTGGCGAAAGACGACTCATGAGATC
GACTCGAGTCGAAGAGCTTTCAATGACATGGAACAATCGAACATCATTCA
GCAGATCCAGAACTCTG
UFO09521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf3-RF | 4852 | CG34378-RF | 1026..1978 | 4..940 | 4365 | 98.1 | Plus |
| Pvf3-RD | 3387 | CG34378-RD | 1026..1978 | 4..940 | 4365 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7155806..7156670 | 867..4 | 4245 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-27 00:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2379 | 124..243 | 113 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2521 | 120..190 | 112 | 62 | Plus |
| gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 662..690 | 782..754 | 109 | 86.2 | Minus |
UFO09521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:42 Download gff for
UFO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 30..992 | 1..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:46 Download gff for
UFO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 1024..1986 | 1..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:28 Download gff for
UFO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 1024..1986 | 1..946 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:28 Download gff for
UFO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7155710..7156672 | 1..946 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:46 Download gff for
UFO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7155710..7156672 | 1..946 | 97 | | Minus |
