UFO09525.5prime Sequence
544 bp (544 high quality bases) assembled on 2011-08-18
> UFO09525.5prime
CAGTCGACATGAGAGTTATGAGAGAGAAAGACCACTCACCAAGAAAGATG
CTTCCTAGCCCGAAACAGGGCTGCGTATACCCTGCCTTAGGATTAATACC
CACATCGTATATATCACACGTACCTTATGATCTGGCCTCCTCAGCGTCGG
TGGCGGCCACATCCTCGTCATCAACGTCGCCGACGACGACGTCGGCAACG
ACAACTGGGCGGCTGCAGCACCAACACTCCCACCAGCAACACCAGACCTT
AAATCACCATGCCAAGGGCAAGCGGAGAAGCAGTTTCGATCAGCCGTTGG
ATCTGCGGTTGGCACACAAGCGGAAAACGGACCTGGTGGATCAAGGACCC
ATGGAGGATGAGAACAGCAACCTGATCATGTTCGCCAGTGAACTGGCGGT
GGCTCAGCAAAAGGAGAAGGAGCTGAACAACAACCATATCGCAGCATCGC
TGGCCGACCTGGGCTTTGATATGAGCCGCAAAATGCTGAGGGCCTTGAGA
GAGGGTGGTGCAGGTGGCGGTGGCGGAGGAGGAGGAGGAGGAGG
UFO09525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-RB | 2611 | CG10348-RB | 765..1300 | 9..544 | 2680 | 100 | Plus |
| CG10348-RC | 3878 | CG10348-RC | 1870..2405 | 9..544 | 2680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18715926..18716461 | 544..9 | 2680 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6892 | 154..271 | 146 | 60.5 | Plus |
UFO09525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:43 Download gff for
UFO09525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RB | 757..1300 | 1..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:58 Download gff for
UFO09525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 1862..2405 | 1..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:36 Download gff for
UFO09525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 1862..2405 | 1..544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:36 Download gff for
UFO09525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18715926..18716467 | 1..544 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:58 Download gff for
UFO09525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18715926..18716467 | 1..544 | 99 | | Minus |
