UFO09526.5prime Sequence
1087 bp (967 high quality bases) assembled on 2011-08-18
> UFO09526.5prime
CAGTCGACATGCCGAAAGGTTTGGCCAAAATGCTAAGACACCTGCCGCTA
ATCTCGCTGCTGCTGTTCGCACCTACTGTGTTGGCCTACTTCGAGGGCTG
TGATAACACCTTCAACCTCAGTCCGGGGACCACCTACGTTGAGTCGCCCT
ACTACCCCAACAATTATCCTGGCGGCACTTCCTGTCGCTACAAGTTCACC
GCTCCCCTGGACTACTACATACAAGTGCAATGTTCCCTGGGAATTCCAAA
GGGCAATGGTCAGTGCACCACGGATAACTTTTGGCTCGACACAGAGGGTG
ATCTTCTGATGCGCGGTGCCGAGAACTTCTGTGGCTCCGGAACCCTTTCA
CGGGAGTCCCTGTTCACGGAGCTGGTTTTCGCCTACATCTCCACCGGCAC
GAAGGGAGGAAGCTTTAAGTGCACCCTGACCACCGTCAAACAGAACTGTA
ATTGTGGCTGGTCGGCCACGACGCGGATTGCCAATGGCCAACAGGCGGCA
GCCAACGAGTTTCCCAGCATGGCGGCCCTCAAGGATGTGACCAAGAACCA
GGCGTCCTTCTGTGGCGGAACCATAGTGGCCCATCGTTATATTTTAACTG
CTGCCCATTGTATTTACCAAGTTAGCAGGGCCACGAATATTGTGGCTATT
GTGGGAACCAATGACCTGGGAAATCCTTCCAGTTCCAGGTACTACCAGCA
GTATAATATTCAGCAGATGATACCACATGAGCAGTATGTTAGCGACCCCG
ACGTAAACAATGATATCGCAGTTTTGATAACCGCCAGCAATATTCAGTGG
TCCCGAGGCGTGGGACCCATTTGTCTGCCTCCGTAGGAACGAGCACACCA
TTCACTTACGACCTCGTCGACGTGATTGGCTATGGCACGGTCTTCTTTGC
CGGACCCACGTCCACAGGTCTGCAGAAGATCAATCTGAATGTGTCACAAC
AGACTGCCAGACGGAGTACAACAATGTGCCACGAAATACACTGGCAAATG
TGGCACCTATGACTATCGGGCACAGTCGCGAACTCTGCCAGTTGAACTCC
GTGGCCAGTCATTCTGCGGATTGAGAGTTCTGTCGAA
UFO09526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30371-RA | 1258 | CG30371-RA | 6..1077 | 9..1070 | 4960 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8268693..8269019 | 576..250 | 1635 | 100 | Minus |
| 2R | 25286936 | 2R | 8269086..8269329 | 252..9 | 1220 | 100 | Minus |
| 2R | 25286936 | 2R | 8268129..8268285 | 832..676 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 8267824..8268062 | 1070..841 | 580 | 88.7 | Minus |
| 2R | 25286936 | 2R | 8268373..8268473 | 675..575 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:36 has no hits.
UFO09526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:44 Download gff for
UFO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 1..1077 | 5..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:03 Download gff for
UFO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 1..1077 | 5..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:38 Download gff for
UFO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 1..1077 | 5..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:38 Download gff for
UFO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8267824..8268062 | 841..1070 | 92 | <- | Minus |
| 2R | 8268120..8268285 | 676..840 | 99 | <- | Minus |
| 2R | 8268373..8268471 | 577..675 | 100 | <- | Minus |
| 2R | 8268693..8269017 | 252..576 | 100 | <- | Minus |
| 2R | 8269087..8269334 | 1..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:03 Download gff for
UFO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4155329..4155567 | 841..1070 | 92 | <- | Minus |
| arm_2R | 4155625..4155790 | 676..840 | 99 | <- | Minus |
| arm_2R | 4155878..4155976 | 577..675 | 100 | <- | Minus |
| arm_2R | 4156198..4156522 | 252..576 | 100 | <- | Minus |
| arm_2R | 4156592..4156839 | 1..251 | 98 | | Minus |
