UFO09528.5prime Sequence
1103 bp (1011 high quality bases) assembled on 2011-08-18
> UFO09528.5prime
CAGTCGACATGACCACTTGTTGCCTTGGAAACGCTGAGGATAAACGTAAA
CAAAAGATGATGGACTGGGCCGAAGAACTCAAGATGACCATAAGAAAGAC
GACGGCCAGGAAGGGTCGGCGCTCCAAGAGTCGCGATGTTCTGAAGGAGG
AGGATGTCCAGGCGGCTGGGGGCTCCAAGGACATTTCCATCGACATTACG
CTGAATGTCCAGGCGGGCACCCCACCGACCACCTCGGACACGGCCACCTC
GTCCACATACAACAATGAATTCGAGTCACATCGACCACCCATTCGTCGCA
TTTCAGGTGGCTGGGCGGATTCTGGACTCAAAGGATTAAAGTCTAAGAAA
AACTCCTTTGATGATGAGCGCTTTAAACAAACAAAGTCGGCTACAAATTC
CATACCAACGGATGACATTCCCGTCATCCCAGACATGGATGATGTCAAGG
ACGAAATCATGCTCAATGAGATTGTAGAACCGCCAACTATTGGCACCTCA
CGATCTGCTGTTTTGAAGGAGGCCAATTCCGATTTGCTTTCCCAGTACGC
CTTTTCAGCTGTGGATGGCTTTGATCTCTCAATCCTCACCGATTGCCTGG
TTCCACAGGAGAGCCTCAACGAGAAGGACGATCTCTGGCAGTGGGACAAG
CTGTTCACCGAGGTCACGGCTGAAATCCATTCGGATAAAGTGCCCAATAT
GGGCATGAAAATAGGACCCGATGTGATTCCACCCACACAATATACTGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCAAGCGAGCTCGATTATCAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTATTCATTAAGCATTCTGGCGACATGGAAGGCATT
CCAAACGCATGATGATCTGAATCGCCAGCGGCATACGAACCTTGTTCGCC
TTG
UFO09528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5780-RB | 881 | CG5780-RB | 25..763 | 8..746 | 3680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12693990..12694248 | 746..488 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 12694572..12694817 | 342..97 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 12694304..12694426 | 487..365 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 12694874..12694964 | 98..8 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:46 has no hits.
UFO09528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:45 Download gff for
UFO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5780-RB | 12..757 | 1..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:10 Download gff for
UFO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5780-RB | 18..763 | 1..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:42 Download gff for
UFO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5780-RB | 18..763 | 1..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:42 Download gff for
UFO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12693990..12694248 | 488..746 | 100 | <- | Minus |
| 2L | 12694304..12694426 | 365..487 | 100 | <- | Minus |
| 2L | 12694494..12694517 | 341..364 | 95 | <- | Minus |
| 2L | 12694574..12694815 | 99..340 | 100 | <- | Minus |
| 2L | 12694874..12694970 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:10 Download gff for
UFO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12693990..12694248 | 488..746 | 100 | <- | Minus |
| arm_2L | 12694304..12694426 | 365..487 | 100 | <- | Minus |
| arm_2L | 12694494..12694517 | 341..364 | 95 | <- | Minus |
| arm_2L | 12694574..12694815 | 99..340 | 100 | <- | Minus |
| arm_2L | 12694874..12694970 | 1..98 | 95 | | Minus |
