UFO09529.5prime Sequence
1106 bp (1034 high quality bases) assembled on 2011-08-18
> UFO09529.5prime
CAGTCGACATGTGGAGCGTGCTGAAAACAAACCCGAAACTAATTTCAGTT
GTTCAGCGTCTGCCAAACGGTTCAAACCGAAAACGATTTGAATACATTTT
CCAAATATTAAAGTTTGTTCAAAACCCACCAAATATGCTGAAACAAGTGA
TTTTCGTGCTCCTCATCGCCGTGTGCACAATGCACAGTGCATCGGCCATC
AAGTGTTATCAGTGCAAATCCCTCACGGATCCCAACTGCGCCAAGGACAA
GATCGATTCTGCCTCTAACATCCGCGCCGTGGATTGCGACAGTGTGCCCA
AGCCCAACACCATGGAGCAACTGCAGCCAGTGACCAGGTGCAACAAGGTG
GTCACCAGCGACCGCGCTGGAACGATTGTGTCCCGCGACTGCCACTTCGA
GTCCATCGGGCAGAAGGACAACGAATGCACGGTGACCCACAGCCGGCAGG
TGGAGAGCTGCTACACCTGCAAGGGTGACCTGTGCAACGCATCCGGAGCA
GGCCGCTTTGTGGCGGTCAGTGCAACGGCTCTCCTGGCGATCCTCGCCCT
CAACTTGAGCCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAGTTGTCCATATGGCCACGTTTAATCAACTGGTGAAACTC
ACCCAGGATTGGCTGAAACGAAAAACATATTCTCATTAACCCTTAAGAAT
AGCCCAGTTCCACGTAACACGCCCAATCGTGCCATATATGTGTAAACTGG
CGGAAT
UFO09529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atilla-RC | 700 | CG6579-RC | 29..583 | 9..563 | 2775 | 100 | Plus |
| atilla-RB | 834 | CG6579-RB | 163..717 | 9..563 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12175568..12175771 | 563..360 | 1020 | 100 | Minus |
| 2L | 23513712 | 2L | 12177544..12177724 | 189..9 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 12176804..12176975 | 360..189 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:56 has no hits.
UFO09529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:45 Download gff for
UFO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6579-RB | 153..723 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:16 Download gff for
UFO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atilla-RB | 153..723 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:44 Download gff for
UFO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atilla-RB | 153..723 | 1..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:44 Download gff for
UFO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12175562..12175770 | 361..569 | 98 | <- | Minus |
| 2L | 12176804..12176974 | 190..360 | 100 | <- | Minus |
| 2L | 12177544..12177728 | 1..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:16 Download gff for
UFO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12175562..12175770 | 361..569 | 98 | <- | Minus |
| arm_2L | 12176804..12176974 | 190..360 | 100 | <- | Minus |
| arm_2L | 12177544..12177728 | 1..189 | 97 | | Minus |
