UFO09531.5prime Sequence
1099 bp (969 high quality bases) assembled on 2011-08-18
> UFO09531.5prime
CAGTCGACATGGACGGCCGAGGGGTTGGCGGCGGTGGTAGTGGTGCTGCC
ACAGGGGGAGGATCCGCCAACAACAAATCAGCTGCTGGAAATAGCGCCGC
CACTGGAAATGCCGATGCATCTACCGCCACAGCGGCGCCCAATGATAAGC
CAACGATTCTGGAAGGCGTTCTCCACAACATCTTCGATGGGCTGATGGAC
AAGGAGGAGCAGGTGCGGATTGCCATGCAGCAGGCGATCGTGAAGATCTT
GGAGACCCATCCGGAACGGGCTGCGGAGATCCTCAGCGAACATCGATCGC
AGCAGCCGAAGATGACCGATCAAACAGTGGCCATGTTGTTGGACTGCATT
CGTCGCGTGGTGGGAGCGGAAACTCCTCTGCCGCCGGCTGCAAATCAGAA
ACTTATTGATCTTGCGCTGCAGGAGCTCACCAAGAATCCCGAGCATTTGC
CACTCATACAGAATCCCGCCCAGCGCATCCTGGTAGCCATCGGACGGAGC
AGCCCAGAGAGTTGTGAGCAGGTAATGGAGGCGCTCCAGGAGAAGGGAAC
AAGTACAGAAGGTGTGGCTCACTTTATGCTGATGCAGTGCCTCGGTCTGC
TGGCCACTGAGAATCCGGCAGGGGTTGTGCCCCACATAAAGGCCATATTG
AGCCGTAGTCAGCCGCATCTAGTCGGGATACGCCAGGATCACATCAAGCA
GGCACATGCCTATGCCATCGGTAGATTCAGTGAGGCTCTACTGGAGGAGA
GCGGCAAAAAGGAGGAGGAGAACTGCTCCACGGAGATCAGTGTGGCCTAC
GATGTGCTCTTCAATCAATGGCTGCACTCCCGGGAGCCAAAGGTTTGCGT
GGAGATACTGCGGCCCTGTCCAGCATGTATCCACTGCTGCCCAAAGACCG
GATTCATGATCAGGCCGCCCGATTGGTTCCCCAGATTCTTGGCGCTCTAT
CGACGCAACGTGGACAGGAATGCCCGTGACGCAGTTCTCTGCCTCGTGTT
GAAAACGAATCTGGCACTTAAATGCCACAGTCTTGATGGCATAATTGACG
TGTTGTCACCATTGTCGACTGGCTGGTTATTCCGACTATGAAAACCGCA
UFO09531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c11.1-RB | 6204 | CG12132-RB | 169..1268 | 9..1099 | 5035 | 98 | Plus |
| c11.1-RA | 5874 | CG12132-RA | 169..1268 | 9..1099 | 5035 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9280676..9281387 | 1055..344 | 3200 | 98.5 | Minus |
| X | 23542271 | X | 9281451..9281630 | 343..164 | 900 | 100 | Minus |
| X | 23542271 | X | 9282792..9282949 | 166..9 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:16:06 has no hits.
UFO09531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:46 Download gff for
UFO09531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 146..1219 | 2..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:21 Download gff for
UFO09531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 164..1237 | 2..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:48 Download gff for
UFO09531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 164..1237 | 2..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:48 Download gff for
UFO09531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9280665..9281387 | 344..1064 | 98 | <- | Minus |
| X | 9281451..9281628 | 166..343 | 100 | <- | Minus |
| X | 9282793..9282954 | 2..165 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:21 Download gff for
UFO09531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9174698..9175420 | 344..1064 | 98 | <- | Minus |
| arm_X | 9175484..9175661 | 166..343 | 100 | <- | Minus |
| arm_X | 9176826..9176987 | 2..165 | 97 | | Minus |
