UFO09610.5prime Sequence
1139 bp (1028 high quality bases) assembled on 2011-09-06
> UFO09610.5prime
ACACCATGGTGAGCAAGGGCGAGGAGGATAACATGGCCATCATCAAGGAG
TTCATGCGCTTCAAGGTGCACATGGAGGGCTCCGTGAACGGCCACGAGTT
CGAGATCGAGGGCGAGGGCGAGGGCCGCCCCTACGAGGGCACCCAGACCG
CCAAGCTGAAGGTGACCAAGGGTGGCCCCCTGCCCTTCGCCTGGGACATC
CTGTCCCCTCAGTTCATGTACGGCTCCAAGGCCTACGTGAAGCACCCCGC
CGACATCCCCGACTACTTGAAGCTGTCCTTCCCCGAGGGCTTCAAGTGGG
AGCGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGAC
TCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTGAAGCTGCGCGGCAC
CAACTTCCCCTCCGACGGCCCCGTAATGCAGAAGAAGACCATGGGCTGGG
AGGCCTCCTCCGAGCGGATGTACCCCGAGGACGGCGCCCTGAAGGGCGAG
ATCAAGCAGAGGCTGAAGCTGAAGGACGGCGGCCACTACGACGCTGAGGT
CAAGACCACCTACAAGGCCAAGAAGCCCGTGCAGCTGCCCGGCGCCTACA
ACGTCAACATCAAGTTGGACATCACCTCCCACAACGAGGACTACACCATC
GTGGAACAGTACGAACGCGCCGAGGGCCGTCACTCCACCGGCGGCATGGA
CGAGCTGTACAAGGGGAATTCGATAACTTCGTATAGCATACATTATACGA
AGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGCCC
GAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACCAA
CAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAAGC
GCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCTAC
TAATACGACACCCACGTGAAGGAGACCACGGAGCCAACATCTTCGGCGTA
GCCTTCACACGCTGCTGGGCAGATGAGCCACAGTTCTTCGCTACGGCGGC
AGCACTGGTGACGTCTACGAGTGCCCTTGATGACGATGCACTGCTCCACT
GCATGCAAATCCGGATCCGATGAAATTACGCGTACTACT
UFO09610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| esc-RA | 1704 | CG14941-RA | 166..545 | 760..1124 | 1445 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11828970..11829103 | 958..825 | 655 | 99.3 | Minus |
| 2L | 23513712 | 2L | 11829175..11829240 | 825..760 | 315 | 98.5 | Minus |
| 2L | 23513712 | 2L | 11828813..11828907 | 1049..959 | 295 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:29:54 has no hits.
UFO09610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:47 Download gff for
UFO09610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esc-RA | 163..542 | 760..1124 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:25 Download gff for
UFO09610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esc-RA | 166..545 | 760..1124 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:30 Download gff for
UFO09610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esc-RA | 166..545 | 760..1124 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:30 Download gff for
UFO09610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11828970..11829103 | 825..958 | 99 | <- | Minus |
| 2L | 11829176..11829243 | 758..824 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:25 Download gff for
UFO09610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11828970..11829103 | 825..958 | 99 | <- | Minus |
| arm_2L | 11829176..11829243 | 758..824 | 95 | <- | Minus |
