UFO09615.5prime Sequence
1099 bp (973 high quality bases) assembled on 2011-09-06
> UFO09615.5prime
CAGTCGACATGCGTTCTCGCAGCAATTCGGGCGTCCGTTTGGACTACTAT
CAGCGCATTGTGCATCGTCTGATCCTGGCCCACCAGGAACCGGTCACCGG
TCTGTTTCCCGCCTCGAATGTGAACTCGCACGCCTGGATCAGGGACAATG
TGTACTGCATCTTGGCCGTTTGGGGCTTGTCCATGGCGTACAAGAAGATT
GCCGATCAGGACGAGGATCGGGCCAAATGCTATGAGCTGGAGCAGAGCTG
TGTAAAGCTAATGCGTGGCCTGCTCATGGCCATGATGAACCAGAAGGACA
AGGTAGAGAAGTTCAAGATGACCCAGAGCCCGTACGATTCGCTGCACGCC
AAGTATTCCAGCAAGAACGGCTTGCCCGTGGTCGATGACAATGAGTGGGG
TCATCTGCAGATCGATGCCGTGTCCCTGTACCTGCTGATCCTGGCCCAGA
TGACGGCCTCCGGCCTGCAGATCGTCTTCTCCCTGGACGAGGTGTCATTC
ATCCAGAATCTGGTCTTCTACATCGAGTCAGCGTACTCGATTCCCGACTA
TGGCATTTGGGAGCGCGGCGATAAAACCAATCATGGTGAACCCGAGCTGA
ATGCCAGCTCCATTGGCATGGCCTGGGCGGCGCTGGAGGCCATGAACGAG
CTGGATCTGTTCGGAGCCCGTGGCGGTCCGGCTAGTGTCATCCATGTGCT
GGCCGACGAGGCCCACAAATGCCAGGCGGTGCTGCAGTCGATGCTGCCGC
GCGAGTCGAATAGCAAGGAATTGGATTCCGGTCTGCTGTGCGTCATCGGC
TTTCCCGCCTTTGCTGTGGACGATGCCCAGCTGATACACAACACCAAGGA
TGCCATTCTATCCCGTCTGCAGGCAAGTACTGCTGCAAGAGATTCTTGCG
CGATGGCTATCGCCACACCGAAAGGAGATCCCTCCAAGGCTATACTACGA
GCGCTGGGAGCTGCGCATGTTCGAGAACATCGAGTGCGAGTGCCGCAATT
CTACTGCTACCTAATCCTGTCCACGCCTCAAGCGACAGCGGGGCGGTGGA
GGAGTACGCCAGCCGATGGAAAAAATCATGGTGCGTCCGAAATGCAATC
UFO09615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7766-RI | 4588 | CG7766-RI | 325..1407 | 9..1086 | 5000 | 98.1 | Plus |
| CG7766-RD | 4639 | CG7766-RD | 325..1407 | 9..1086 | 5000 | 98.1 | Plus |
| CG7766-RC | 4873 | CG7766-RC | 325..1407 | 9..1086 | 5000 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9102491..9103071 | 589..9 | 2905 | 100 | Minus |
| X | 23542271 | X | 9101728..9102234 | 1086..585 | 1925 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:27:18 has no hits.
UFO09615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:52 Download gff for
UFO09615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 301..1407 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:17:06 Download gff for
UFO09615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 317..1423 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:46 Download gff for
UFO09615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 317..1423 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:46 Download gff for
UFO09615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9101712..9102233 | 586..1099 | 95 | <- | Minus |
| X | 9102495..9103079 | 1..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:17:06 Download gff for
UFO09615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8995745..8996266 | 586..1099 | 95 | <- | Minus |
| arm_X | 8996528..8997112 | 1..585 | 99 | | Minus |
