UFO09616.5prime Sequence
1118 bp (1023 high quality bases) assembled on 2011-09-06
> UFO09616.5prime
CAGTCGACATGAAGATGGCATCTCAACGCTTCTGCCTGCGGTGGAACAAC
CACCAGAGCAACCTTCTGTCCGTCTTCGACCAGCTGTTGCACGCAGAAAC
CTTCACAGATGTGACGCTGGCCGTCGAGGGGCAACACCTGAAGGCACACA
AGATGGTGCTATCCGCCTGCAGTCCCTACTTTAATACCCTCTTTGTAAGT
CATCCGGAAAAGCATCCGATTGTCATACTTAAGGATGTGCCCTACTCGGA
CATGAAGTCGTTGCTAGACTTTATGTACAGGGGCGAGGTCTCAGTGGACC
AGGAGCGACTCACTGCATTCCTGCGCGTGGCCGAGAGCCTGCGCATCAAG
GGCCTCACCGAGGTCAACGACGACAAGCCCTCGCCGGCAGCAGCAGCTGC
AGGAGCGGGTGCGACGGGCTCTGAGAGCACAGCCACTACACCCCAGCTGC
AGCGCATCCAACCGTATTTGGTGCCCCAGCGGAATCGCTCGCAGGCCGGC
GGTCTGCTGGCCAGTGCCGCCAATGCCGGAAATACACCCACCCTGCCGGT
GCAGCCATCGCTGCTCAGCTCGGCCCTGATGCCCAAGCGAAAGAGGGGCA
GACCCCGGAAGCTATCTGGCAGCTCGACTGGCACGGGGAACGACTACGAC
GACTTTGATCGCGAGAACATGATGAACGACTCCTCCGACCTGGGCAACGG
CAAAATGTGCAACGAGTCCTACTCCGGCAATGACGATGGCTCCGACGACA
ATCAGCCGAACGCAGGACACACGGATGATCTAAATGAAAGTCGCGATTCT
CTGCCCTCGAAACGATCAAAGAACTCCAAGGATCACCGCGTGGTGAGCCA
TCATGAAGACAACAGCACTTCCGACGGAAACGACAGCGATGGCGAAGGTC
TGGACACATCATATATGGAACCTCAACTTATGCTGGACGAATATGACGAG
CCCGTAGAGTTCAGTACACCCGCTCACCGACAACAGCTCACCCACGCAGG
ACCGCACGGATGGTAGTCCCCCTCACGAGCAGGCCGCGCCAACAGCCTTC
CTCAATCGCTGCCAGAGAAAAACCCAGGTTGAAACAGCAGCACCGCGGCG
GCAGCGGAATCAACTTTA
UFO09616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttk-RH | 4252 | CG1856-RH | 251..1359 | 9..1113 | 5205 | 98.5 | Plus |
| ttk-RD | 4254 | CG1856-RD | 253..1361 | 9..1113 | 5205 | 98.5 | Plus |
| ttk-RC | 4497 | CG1856-RC | 496..1604 | 9..1113 | 5205 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31727620..31728261 | 151..792 | 3180 | 99.7 | Plus |
| 3R | 32079331 | 3R | 31727291..31727434 | 9..152 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 31729631..31729852 | 873..1092 | 700 | 93.8 | Plus |
| 3R | 32079331 | 3R | 31728392..31728479 | 786..873 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:27:22 has no hits.
UFO09616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:53 Download gff for
UFO09616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RD | 252..1364 | 9..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:17:34 Download gff for
UFO09616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RC | 496..1608 | 9..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:48 Download gff for
UFO09616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RC | 496..1608 | 9..1117 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:48 Download gff for
UFO09616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31728392..31728479 | 786..873 | 100 | -> | Plus |
| 3R | 31729632..31729879 | 874..1117 | 92 | | Plus |
| 3R | 31727291..31727434 | 9..152 | 100 | -> | Plus |
| 3R | 31727622..31728254 | 153..785 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:17:34 Download gff for
UFO09616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27553013..27553156 | 9..152 | 100 | -> | Plus |
| arm_3R | 27555354..27555601 | 874..1117 | 92 | | Plus |
| arm_3R | 27553344..27553976 | 153..785 | 99 | -> | Plus |
| arm_3R | 27554114..27554201 | 786..873 | 100 | -> | Plus |
