UFO09623.5prime Sequence
1077 bp (1024 high quality bases) assembled on 2011-09-06
> UFO09623.5prime
ACACCATGGTGAGCAAGGGCGAGGAGGATAACATGGCCATCATCAAGGAG
TTCATGCGCTTCAAGGTGCACATGGAGGGCTCCGTGAACGGCCACGAGTT
CGAGATCGAGGGCGAGGGCGAGGGCCGCCCCTACGAGGGCACCCAGACCG
CCAAGCTGAAGGTGACCAAGGGTGGCCCCCTGCCCTTCGCCTGGGACATC
CTGTCCCCTCAGTTCATGTACGGCTCCAAGGCCTACGTGAAGCACCCCGC
CGACATCCCCGACTACTTGAAGCTGTCCTTCCCCGAGGGCTTCAAGTGGG
AGCGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGAC
TCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTGAAGCTGCGCGGCAC
CAACTTCCCCTCCGACGGCCCCGTAATGCAGAAGAAGACCATGGGCTGGG
AGGCCTCCTCCGAGCGGATGTACCCCGAGGACGGCGCCCTGAAGGGCGAG
ATCAAGCAGAGGCTGAAGCTGAAGGACGGCGGCCACTACGACGCTGAGGT
CAAGACCACCTACAAGGCCAAGAAGCCCGTGCAGCTGCCCGGCGCCTACA
ACGTCAACATCAAGTTGGACATCACCTCCCACAACGAGGACTACACCATC
GTGGAACAGTACGAACGCGGCGAGGGCCGCCACTCCACCGGCGGCATGGA
CGAGCTGTACAAGGGGAATTCGATAACTTCGTATAGCATACATTATACGA
AGTTATCAGTCGACATGGAAAACCTAGACGCCACCATAGATAGCATGGAG
AACAGTCGGTTTGCAGCGCTCTACGGGAGTTTGATCAAGGAGTTAACCCT
AACTTCGGAGTTGTCCCAGACGGACATCACCTGTTTGCTCGTCGTTTATT
ACAAGTTCTCAAAGGCCAACGGACCGCAGTGCAAGCAGATGACCAGAAGC
AGTTCTATCAGATGTTCTTGGTGCTCTTCACGTGGCCAGTGTCCAGGTGA
TCGAACGCACTCTGCTCGCCGATCCCAGGTTCCGTATAGTTCATAAGTTA
TGCCGGCAGGGTAACTGATGAATAGAC
UFO09623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowi-RA | 830 | CG15178-RA | 148..404 | 765..1019 | 1220 | 98.8 | Plus |
| CG15177-RB | 989 | CG15177-RB | 131..377 | 764..1008 | 315 | 76.7 | Plus |
| CG15177-RA | 1013 | CG15177-RA | 131..377 | 764..1008 | 315 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6627497..6627753 | 1019..765 | 1170 | 98.8 | Minus |
| 3R | 32079331 | 3R | 6628945..6629191 | 1008..764 | 265 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:27:12 has no hits.
UFO09623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:51 Download gff for
UFO09623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..411 | 765..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:16:07 Download gff for
UFO09623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..411 | 765..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:43 Download gff for
UFO09623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..411 | 765..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:43 Download gff for
UFO09623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6627490..6627753 | 765..1027 | 98 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:16:07 Download gff for
UFO09623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2453212..2453475 | 765..1027 | 98 | == | Minus |
