UFO09630.5prime Sequence
1131 bp (1018 high quality bases) assembled on 2011-09-06
> UFO09630.5prime
CAGTCGACATGAAGTACTTGTGTTGGATCTTAGTGACCACGTCAGTGCTA
GGTCAATTCACCAAGCAACTTTACCGAAGCTTTTTGCAGGATAATAAACA
ATATAACATCATTGCCTCGCCTCTTTGCGTCGAGATTGGAATGAGCATGA
TCCTCATGGGAGCGGATGGAAATACAGCCAATGAACTGAGGACGGCTCTG
AATCTGCCAGAGGATAAAAAGAATGTAGCTACTATATATGATAAGCTTTT
GACTAAACTCGAAAGGGGCAAGAAGGTAGCCATTCTCCACTTGGCGAATC
GCTTGTTTGTCAACGAAACAATTGGTGTTAACAAGCGCTACAATAAACTA
GTCAATAAGCACTTTAGGGCCGAGGCAGAAGCCATTAAGCTGGCCGATCG
ATTGAAGGCAGCCTGGGCTATAAACGATTGGGTGCTCGACCAGACACTAG
ATAATGTGAAAGACATTATAATACCCAGTGACTTGACGCCCGATGAAAGT
GCGGTCATGATCAACGCAGCTTTCTTCAAGGGCTACTGGAAGACGCGATT
CGATAAGATGAACACCAAGCCCAAGGTATTCTATGTATCCAAAAGTTACC
AAGTAAATGTCAATATGATGTCGCAAGTGGGTCGATTTAAGATGCGTACT
TCGACCATAGACCAAATTATTGAGCTTCCATTTGCATACTCAAACCTTTC
AATGGTAATCGTTCTGCCCAAGGACAATGGGTCCCTAACTCACGCAGAAG
CCACAATCGAAAGTTACCCTCAGATAGTTCTCACTGAAATGGATGTACAT
GTGCAGCTTCCTAAATTTAAAATCGATTTCCGCATGGAGCTCGTCGAAAC
TCTTAAAAGCATGGGAATACAGGATCTCTTCATAGTTCGTCGGATATCAG
CGTCCTACTGAACCAGTCTGGCACTAGAATCAGCCAAGTCGTACCACAAA
GCCTTTATAGAGATTGACGAAGAAGGCGGGTCCGCAGGATCCGCCTTCTG
GCGAGCCCAATTCGAGGATTATCTGATTATGGCGACTAGTGTGGTACTTT
ACAGTCATAGTCCTTTGTCTCATGATCCGATGATGACACATAAATTCGGG
CCGATCGTGATCCTTGAGAAGAACATCATGA
UFO09630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Da-RB | 1270 | CG31902-RB | 17..1134 | 8..1115 | 5125 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7888205..7889043 | 860..22 | 4180 | 99.9 | Minus |
| 2L | 23513712 | 2L | 7887988..7888150 | 1025..861 | 615 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:27:41 has no hits.
UFO09630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:57 Download gff for
UFO09630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Da-RB | 9..1110 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:20:29 Download gff for
UFO09630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Da-RB | 9..1110 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:59 Download gff for
UFO09630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Da-RB | 9..1110 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:59 Download gff for
UFO09630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7887988..7888150 | 861..1025 | 96 | <- | Minus |
| 2L | 7888205..7889043 | 22..860 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:20:29 Download gff for
UFO09630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7887988..7888150 | 861..1025 | 96 | <- | Minus |
| arm_2L | 7888205..7889043 | 22..860 | 99 | <- | Minus |
