UFO09643.5prime Sequence
1062 bp (968 high quality bases) assembled on 2011-09-06
> UFO09643.5prime
CAGTCGACATGGCTGGAATCAGTGGAAGTTCCCAGCCGCGTCTGCAGCTA
TATATATTCTTGTGCCTGATGGCGTCGGTGTTTGCTTCATTACCGGAGGA
ACTGAGAGGAGCTGCAGGACCTGAATCGAGAATGGATGTTCTAGGACTCT
CGCCGGGACAAAGAGTCCTGGCTGCAGTGCCTGCGTCAGGACGCACGAGT
TTTTTGCTGTACCAATTAGCTTTGGCCATAAATTCAGCCGCCGGCCTGGA
ATCGCCAACGATGCAGGAAGTGGAGGTGGTCGATGTGGTGGAGAACCAGG
AGCAGTTCCTGCCGGCGAGCCCGGATCCCAACTGGCTGGCCGCCATGGCG
AATGAGTTTCAGAGTGTGCCAGTGTACGAGACCTTTCCGGCGGACTTGCA
GAACTGGCTGATGGATGGCTACGGGATCAGTGCCACGGATTTCTACCACA
GCTGGAGCAGAGCAGGATTTGGCAGGAGGAGCAGCTCCCGCACCCAGCTG
ATCTGTACGGCAGATGGCCAGTGCTATGAGGTCAACAAAATGGTCACTGC
CTGCTGTCCATTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAACGCATGATGAACCTGATCGCAGCGGCA
TCAGCACTTGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGCGAGAG
TGGTCATATGGCCACGTTTAAATCAACTGTGAACTCACCAGGATGCTGAA
ACGAAACTTCTCATAACATTTAGATAGCAGGTTCACGTACGCACATCTGC
ATATGTGTAACT
UFO09643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34251-RB | 804 | CG34251-RB | 223..777 | 9..563 | 2760 | 99.8 | Plus |
| CG34251-RA | 1059 | CG34251-RA | 63..617 | 9..563 | 2760 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17682933..17683139 | 357..563 | 1020 | 99.5 | Plus |
| 3L | 28110227 | 3L | 17673657..17673838 | 9..190 | 910 | 100 | Plus |
| 3L | 28110227 | 3L | 17677399..17677574 | 187..362 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:27:55 has no hits.
UFO09643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:00 Download gff for
UFO09643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34251-RA | 59..622 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:22:59 Download gff for
UFO09643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34251-RA | 59..622 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:08 Download gff for
UFO09643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34251-RA | 59..622 | 1..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:08 Download gff for
UFO09643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17673648..17673837 | 1..189 | 97 | -> | Plus |
| 3L | 17677402..17677574 | 190..362 | 100 | -> | Plus |
| 3L | 17682939..17683144 | 363..569 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:22:59 Download gff for
UFO09643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17666748..17666937 | 1..189 | 97 | -> | Plus |
| arm_3L | 17670502..17670674 | 190..362 | 100 | -> | Plus |
| arm_3L | 17676039..17676244 | 363..569 | 98 | == | Plus |
