UFO09646.5prime Sequence
1140 bp (987 high quality bases) assembled on 2011-09-06
> UFO09646.5prime
ACACCATGGTGAGCAAGGGCGAGGAGGATAACATGGCCATCATCAAGGAG
TTCATGCGCTTCAAGGTGCACATGGAGGGCTCCGTGAACGGCCACGAGTT
CGAGATCGAGGGCGAGGGCGAGGGCCGCCCCTACGAGGGCACCCAGACCG
CCAAGCTGAAGGTGACCAAGGGTGGCCCCCTGCCCTTCGCCTGGGACATC
CTGTCCCCTCAGTTCATGTACGGCTCCAAGGCCTACGTGAAGCACCCCGC
CGACATCCCCGACTACTTGAAGCTGTCCTTCCCCGAGGGCTTCAAGTGGG
AGCGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGAC
TCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTGAAGCTGCGCGGCAC
CAACTTCCCCTCCGACGGCCCCGTAATGCAGAAGAAGACCATGGGCTGGG
AGGCCTCCTCCGAGCGGATGTACCCCGAGGACGGCGCCCTGAAGGGCGAG
ATCAAGCAGAGGCTGAAGCTGAAGGACGGCGGCCACTACGACGCTGAGGT
CAAGACCACCTACAAGGCCAAGAAGCCCGTGCAGCTGCCCGGCGCCTACA
ACGTCAACATCAAGTTGGACATCACCTCCCACAACGAGGACTACACCATC
GTGGAACAGTACGAACGCGCCGAGGGCCGCCACACCACCGGCGGCATGGA
CGAGCTGTACAAGGGGAATTCGATAACTTCGTATAGCATACATTATACGA
AGTTATCAATCGACATTAAACGCCAACAAGTTACGGTGGACTATTGGACC
ATGTTTAAGACATCGGGATTGTGTCTTTTACTGGCCATTTGCGGATTTGT
ACTTCTTAAAATGGTGCAGACCATTTTCTGGCTACCTGGACATCTGAAGA
AGAACCAGCAGCGCCTGCAGATCTGGCCCAATCTATGCCAAGGATATTAG
CGAGGAAGAGAGGGACGAGATCGAAAACTGTTCACAGTTCGGGAGCCGCT
GACTGAAAACGATCAACCCGTTGCCTCGACAAGCCAGAGACTTCTGAGCC
AAAACGACAGGCAGCTTTCCTAGAACCATTCGTTTGCCGCGTCCGAGTAA
TGGTCATATCATAATCCATTGCCTAATCAAATCCCACTAG
UFO09646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34309-RA | 588 | CG34309-RA | 38..328 | 768..1054 | 1160 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13372868..13373066 | 860..1054 | 550 | 92 | Plus |
| 3R | 32079331 | 3R | 13372667..13372758 | 768..859 | 445 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:27:44 has no hits.
UFO09646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:57 Download gff for
UFO09646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34309-RA | 35..335 | 765..1065 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:20:58 Download gff for
UFO09646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34309-RA | 35..335 | 765..1065 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:00 Download gff for
UFO09646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34309-RA | 35..335 | 765..1065 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:00 Download gff for
UFO09646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13372664..13372758 | 765..859 | 97 | -> | Plus |
| 3R | 13372868..13373073 | 860..1065 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:20:58 Download gff for
UFO09646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9198386..9198480 | 765..859 | 97 | -> | Plus |
| arm_3R | 9198590..9198795 | 860..1065 | 91 | == | Plus |
