UFO09656.5prime Sequence
1098 bp (977 high quality bases) assembled on 2011-09-06
> UFO09656.5prime
CAGTCGACATGTCTACGAAACTGGAGCAGCAGCACTCGAAGCCCATTCTG
AGTCCAACTCGATCCCTGGACGAAGGTTTCGAAAGTGATCCGGATCGGGT
TTCCACCGATTCGGAGCATCAGACAAGTGGAACCACTAGCACCAGCACTT
GCAACAACAGCAATGCAGCAAATACGGTCAGCAACAACAATGCCAGTAAG
CTCGCGCAGCTTAGTTCGGCGGCTACTGGGGGCGCCACTAAGACGACGTC
CGGAGCAAATGCATCCAGCCCCTCAATGGTGAACTCCGTCAGGGGCGCAC
TCACTTTGGCCGCCCCCCAGCTGCAGAGGCGGGAGTTCTTTGCCAAGGAT
CAGGGGAAACTAAGGCATCAGGCACCCCCGCAACAGCCACGCCTCCAGTA
CCAAAAACAACGACAGCCCCTCGTTCCAAGTGCCGCCTCCAGTGTCCACA
ATCACCGGTTGACCGCGTCGATGCAGCAGGGATCTTCGGGATTGGGCAAT
AGTAGCCTGGGAACCGGAACTGGCACTGCTAACTACCGGCGCGGACGTCG
GCTCCACGTGAATCCACCTCGAACCGGCATTAGATCCCATTCGGTGGACG
CCATTTCGCGGCACAATCGCCACGGCTACGATCCAAGTAGCCTGATCCTG
AAGCACGACGGAAATGGCAATATAAGCAGCAGCAATGCCGGTGCCACCGC
CACCCGCATGCTGAACTACAAGTCGCCTGGCGGAGGCACTGCAGCCGGAG
CACCGGCAGCCGGACAGGCCCTACTCGTCCAACCGATTTCTAGTGCCACC
CTATCTCCACTGGTGGCAGCGGGCGTGGTCGATGTGGTCGAGGGCGGTGG
CTCCTCGCCGGTCATCGCCTCGGCCACCCACAGCCTGTATACCTTCTATC
CGGCGGAGAGATCTCCAGGTGTGGCAGACGGAGTGCGCGATCTCACCTAA
CAAGTCCTCCCGAAATATGCATCAACTAACACAGCACCCGTGTTGCTGGA
CGCAGTCCATTTCCAGAACAGCAGAAGAATACATACTTCCGGCAGCAGCG
GCATGCACTTGCGACCTCATCAACTCAACGGTCAGGAAGGGCTGGGTG
UFO09656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31176-RA | 2511 | CG31176-RA | 320..1403 | 8..1087 | 4960 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21718331..21719341 | 1016..8 | 4740 | 99 | Minus |
Blast to na_te.dros performed 2014-11-26 23:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6941 | 113..210 | 125 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2399 | 113..190 | 124 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6787 | 121..199 | 123 | 67.1 | Plus |
UFO09656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:06 Download gff for
UFO09656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31176-RA | 311..1403 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:26:23 Download gff for
UFO09656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31176-RA | 313..1405 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:20 Download gff for
UFO09656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31176-RA | 313..1405 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:20 Download gff for
UFO09656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21718319..21719345 | 1..1027 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:26:23 Download gff for
UFO09656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17544041..17545067 | 1..1027 | 98 | | Minus |
