UFO09659.5prime Sequence
1090 bp (988 high quality bases) assembled on 2011-09-06
> UFO09659.5prime
CAGTCGACATGATGGCACTGCGGAAAACTTTGGTCTTCAACAGTGCGCTT
CTGTTGGTTCTGCTGCTGGCGGAGTCCCAAGCCAAGCCCTCGCAGGATTT
AAACAAACCGCAGACGAAGGAGCCAAGTGATCTGGGTGCAGGAGCTGGAG
CAGCACGAGGAGTGCCGGTGGCTGCCAAAAATAAGACAGCTGTCGTGGAG
GATACTTCCGACGATTCCGACTCAGAGGCGGAATCGGAGGAGCAGCAGCG
GCGGTCATATCCCCACCGCGACGAGGACCAACTGAACTCGGCCACCAATT
TGGTTTTGGCACAGAACTACAAGTACGATGTGGAGATCCTGGAATCCGGC
GATGCCGACCAAGACGACAGTAGCATGGATGACGTGGACGATCTGGAGGA
GCGTTTCAAGGGACGCGGTGTGATCTTCAGCACGGACACCGAAACCTTCG
CCAACGAGAACATCGAGATGAGCCCGCTGAACGTGCAGGCGGATGCGGTT
AGCCAGGGACATGTGCTGCTCGGCATCGTGGTGGTGGCACTGGCCTTGGT
CTCCATCGGCCTGTACGCCGGCCTGGTCATATGGCGCTCGCACCTGGAGC
AGCGGTATGGAATGCGCGATGGACTGGTCAATCACGACTTGGAGGATGAA
GCGGCTGGTGTCGACGACGTCGATTATCAGGTCTATGCGCCAACCACGAC
GGCAGCTACGCCTAGGGCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTATGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGAGTCATTACTGGATCTATCAACAGAGTCAAGCGAGCTCGATATCA
AATACGCCCGCCTGCACTCATCGCAGTACTGTGATCATACATCGCGACTG
AGCTCCAGGAATACTATCCGCACTGCTGTATCTGAGATTGTAGCTGATCT
ATCCTAAGTCATGGACTACGGTCGTGTGCTGAAGCGGGGT
UFO09659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5835-RA | 1344 | CG5835-RA | 225..935 | 9..719 | 3510 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19149234..19149634 | 599..199 | 1990 | 99.8 | Minus |
| 3R | 32079331 | 3R | 19151488..19151613 | 201..76 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 19149041..19149161 | 719..599 | 575 | 98.3 | Minus |
| 3R | 32079331 | 3R | 19153396..19153462 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:28:05 has no hits.
UFO09659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:03 Download gff for
UFO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5835-RA | 213..929 | 1..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:24:25 Download gff for
UFO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5835-RA | 219..935 | 1..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:13 Download gff for
UFO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5835-RA | 219..935 | 1..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:13 Download gff for
UFO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19149041..19149161 | 599..719 | 98 | <- | Minus |
| 3R | 19149235..19149632 | 201..598 | 99 | <- | Minus |
| 3R | 19151489..19151613 | 76..200 | 100 | <- | Minus |
| 3R | 19153396..19153468 | 1..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:24:25 Download gff for
UFO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14974763..14974883 | 599..719 | 98 | <- | Minus |
| arm_3R | 14977211..14977335 | 76..200 | 100 | <- | Minus |
| arm_3R | 14979118..14979190 | 1..75 | 94 | | Minus |
| arm_3R | 14974957..14975354 | 201..598 | 99 | <- | Minus |
