UFO09660.5prime Sequence
994 bp (952 high quality bases) assembled on 2011-09-06
> UFO09660.5prime
CAGTCGACATGCAGAGCCTACCACTACCAGGAGATGAAGCCATAGGCTTG
CTACCCTCTCAGTCAGAAAGCTTTTCCATTTGGGTCAACGGCGAGGAGCA
CTGGATATCCGGTGCGGACTCAAGCACCACCTGCGCAGATCTAATATGCG
CGTTAATCAGCTACCAAATAGACCAGAAACATGTGCTCAGCAAGGAAGAA
ATACTCGCTCCACAGCAATTTGCTATTGTCCAAAAGCAGCGTCACTACGA
GGAGTATTTGGATAGTAGTGCCAGGCTCCTTGATGTTATAACCAGCCCTC
ACGCAATGCCGAAAGAGGAATACCAGCTACATCTTCGTCACTTGGCCACT
TCAAGTCGAAAGCAAGTCCCGACGACCGATAAGGACAGTGGAATGGGCAG
TCCAGTAGATAGTTCGCGGAGCATGCGCATCCGGCGGAGGGGCAAGCTTC
TCTCCACTAAGACCACAGACAATATCAACACTAAGCAGTCGAAGAGAAGC
CGGAAGCAGCAGCAGAGGAACCACCACTTAACTCCGAACGAGAGCCTGCT
TACCATTATCCTTGCCCAAGATGAAACCATTCTGCAGCAAATGACCATGT
TGCACGAAAAGAATCGACAGATTTTTAAAATCGAGGAGGAGAAGCACCAG
GTGAGGGAGCGAGAGCTGGGTAAAAACTACCTCCTTGAGACGTACTTAAA
GGACTTGGATGAGCCCCAAGAAAAGGGCGAAGACCTGCACTGTTTGAAGA
AATGACACACATAGACGTAGATCGAGACTTTGGTATAATGTCAGATAGTA
CCGTCCAAACTGCGTTAAATAGTGGCACTATGCAGACGACATCCGGCTTT
ACTGGCTGGAAAAGATTCACGAGGTAAACAAAGAGCTGCAATGTGAAGAG
GAACTTTTACTACTGTCAGCTACATGACGTCACAACAGCCACACAATGCT
GACTGATCGTACGTGGTCGAGCAGTCGTTGGACGTGTGTGTCGA
UFO09660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13875-RB | 1686 | CG13875-RB | 107..1011 | 9..911 | 4445 | 99.6 | Plus |
| CG13875-RA | 1975 | CG13875-RA | 396..1300 | 9..911 | 4445 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 180777..181088 | 9..320 | 1560 | 100 | Plus |
| 3L | 28110227 | 3L | 181148..181431 | 321..604 | 1420 | 100 | Plus |
| 3L | 28110227 | 3L | 181490..181680 | 605..794 | 875 | 98.4 | Plus |
| 3L | 28110227 | 3L | 181741..181860 | 793..911 | 550 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:28:09 has no hits.
UFO09660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:03 Download gff for
UFO09660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13875-RA | 387..1306 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:24:54 Download gff for
UFO09660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13875-RA | 389..1308 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:15 Download gff for
UFO09660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13875-RA | 389..1308 | 1..920 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:15 Download gff for
UFO09660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 180770..181088 | 1..320 | 98 | -> | Plus |
| 3L | 181148..181431 | 321..604 | 100 | -> | Plus |
| 3L | 181490..181680 | 605..794 | 98 | -> | Plus |
| 3L | 181743..181868 | 795..920 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:24:54 Download gff for
UFO09660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 180770..181088 | 1..320 | 98 | -> | Plus |
| arm_3L | 181148..181431 | 321..604 | 100 | -> | Plus |
| arm_3L | 181490..181680 | 605..794 | 98 | -> | Plus |
| arm_3L | 181743..181868 | 795..920 | 96 | | Plus |
