UFO09661.5prime Sequence
1104 bp (1007 high quality bases) assembled on 2011-09-06
> UFO09661.5prime
CAGTCGACATGAAGTACCTCAAAGACTGCAGTTTCCATGTCCTGTTGGTT
CTGCTGCTAATGATCCGTGGATCGCTTTGTGTGCCAGCTTTGGACGCAGC
TCCTCCGGCTGCCACACCCAACACCGTGGAAGAGTCGGAAAATCTGGTCG
AGGGCAGTGGCGAACCAGTTGTCGCACCCACAGACGTGGTACCTGCAGCC
AGCAATGGTACCACTCCTCCGGCTGAAGGAAACTCGGAAGCAGCGGTGCC
AGACAACGTGGCCAGTGGTAGCAGCATTGATCCCACCACCATTTACGCTG
GAGGCCTACTCACTCCCGAGGCCTTTCAGCAGTACCTGAGTCAGTATGGA
GCGTATGCTCCTTACTCCTATCCTGCTCCTGTTGCGGGAACAGCAGCTGG
CATTTACCCGTACCCTGGACCCATTGTGGTGCAGACGGGCTACGAGGGAT
TCCTGGTGCCCACTAATACCGCAGGACAATCGGACAGCACCACTGTCCTG
GCTCCCACTGCCCAGCCCAACTCCTCGAATCCACTGATGACATTTGTCTC
CAATCTTCTGCCCACGATCCTGATGTCCACGCTCTTTCGCATCGCTGCCG
TTGTGGTTTCCGCCGTGGGCATCATCCTCTTTGGCGGTGCCATCACCAGT
GCCCTGTGCAGGATCACTCCAATCTGTGAAATACCCGCCCGTGCTGTGAA
TATCCTGCGGACGGGTGGTGCCCAGGATGTGGGTCGCATGCTGGCCGAGG
AGATGACTCCGGAACGAGTGCGTCGGGCAACGGAATTCGTGCGCAACGCC
ATCCGGAAGTACAAGCAACTGCAGAAGCTGGTGGAGGCATCGGAGGCGGT
GACCGAGTTGACCAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGGTAAGTGGTCATAATCATAATCATATCATAATCATATCACACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAAA
CGCCCGGCGGCAACCGGATCGTTCTGAACAATTCAGAATGGAATTTCTGG
AGGTCATACTGATCTATCAAGAGTCAGCCAGACTCGATATCAATACGCCC
CGCC
UFO09661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10035-RB | 1754 | CG10035-RB | 32..889 | 9..866 | 4290 | 100 | Plus |
| CG10035-RA | 972 | CG10035-RA | 32..889 | 9..866 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12381734..12382352 | 866..248 | 3095 | 100 | Minus |
| 3R | 32079331 | 3R | 12382421..12382660 | 248..9 | 1200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 8133..8200 | 863..797 | 112 | 64.7 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9577..9644 | 863..797 | 112 | 64.7 | Minus |
UFO09661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:07 Download gff for
UFO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10035-RA | 22..888 | 1..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:27:22 Download gff for
UFO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10035-RA | 22..888 | 1..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:24 Download gff for
UFO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10035-RA | 23..889 | 1..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:24 Download gff for
UFO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12381734..12382351 | 249..866 | 100 | <- | Minus |
| 3R | 12382421..12382667 | 1..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:27:22 Download gff for
UFO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8207456..8208073 | 249..866 | 100 | <- | Minus |
| arm_3R | 8208143..8208389 | 1..248 | 98 | | Minus |
