UFO09662.5prime Sequence
1109 bp (991 high quality bases) assembled on 2011-09-06
> UFO09662.5prime
CAGTCGACATGGAGGAACCGAAAAGTGTATCCACAGCGGAGCTTCCCAGC
ACATCAACCGGGGCATCGTCGTCCTCATCGACTTTGTCCAACAACGTGAG
CTACGACAAGATAGCCTGGACTCGGGATATCACAGAACCCTTGGCTGAGG
AGTCATCTACAAGTCAATTGCGCCCGCTGGGTACCTCGATTCCAACCAAT
TCGACGGCATCGGAACTGAAGAAGTCCAACACTTCGTATTCCTTTACTGG
AGACTATCTATCTGGTGGCAATAAGGCCGATCTGAAGGGTGGCTATCCAT
TCGGCGGCACCGATACGGACACAAAAGCCAACGAAAAGGACAAGGAGAAG
GAACATACCGCAGACGACTCACTCTACGAGTGCAACATATGCCTGGACAC
CGCCAAGGATGCTGTGGTCAGCATGTGCGGCCATCTGTTCTGCTGGCCGT
GCCTGCATCAGTGGCTCCTGACGCGTCCCAATCGCAAACTCTGTCCCGTT
TGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGCTGTACGGAAGAAA
TAGTACACACCAGGAAGATCCACGTAACAAAGTTCCACCACGCCCCGCTG
GACAACGTACAGAACCAGATCCTGTTCCCGGGTTCCCTGGATTCGGATTC
GGCGACGGATTTCACATGTCTTTCGGTATTGGAGCTTTTCCTTTCGGGTT
CATAACATCTAGGCTCAACTTTTTCGAACCACGTCCACCTGCTGATATTA
GAAGCTACACGAAGATGAACCCTGGGCCCTGTCAAAACTGTTCTGGCATT
TTGTCGTTTTTGTGATATATGGGCTGCTCGTTCCAATAGTGCACGGATCA
TCCCGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATATCATAATCATAATCATAGTCATATCACAACTAGCCTAGGAGA
TCCTGTCATGACTAGTGCTTGGATTCTCACCATAAAAACGCCCGGCGGCA
CCGAGCGTTCTGAACAATCCGATGGGAGTTCTGAGTCATTACTGGATCTA
TCACGAGTCCAGCGAGCTCGAATTCAAATTACGCCCGGCCTGGCACTTCA
TCCGAGTAC
UFO09662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32581-RB | 1345 | CG32581-RB | 148..997 | 8..856 | 4225 | 99.9 | Plus |
| CG32581-RA | 1428 | CG32581-RA | 231..1080 | 8..856 | 4225 | 99.9 | Plus |
| CG8974-RE | 1317 | CG8974-RE | 103..839 | 8..744 | 3625 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15797667..15798233 | 574..8 | 2835 | 100 | Minus |
| X | 23542271 | X | 15794497..15795063 | 574..8 | 2820 | 99.8 | Minus |
| X | 23542271 | X | 15797437..15797604 | 741..574 | 840 | 100 | Minus |
| X | 23542271 | X | 15794267..15794434 | 741..574 | 795 | 98.2 | Minus |
| X | 23542271 | X | 15797256..15797372 | 856..741 | 535 | 99.1 | Minus |
| 3L | 28110227 | 3L | 15121665..15121843 | 373..551 | 310 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:28:27 has no hits.
UFO09662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:08 Download gff for
UFO09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32581-RB | 137..995 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:27:53 Download gff for
UFO09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32581-RA | 226..1084 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:25 Download gff for
UFO09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32581-RA | 226..1084 | 1..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:25 Download gff for
UFO09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15797252..15797371 | 742..861 | 97 | <- | Minus |
| X | 15797437..15797603 | 575..741 | 100 | <- | Minus |
| X | 15797667..15798238 | 1..574 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:27:53 Download gff for
UFO09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15691285..15691404 | 742..861 | 97 | <- | Minus |
| arm_X | 15691470..15691636 | 575..741 | 100 | <- | Minus |
| arm_X | 15691700..15692271 | 1..574 | 99 | | Minus |
